genome.fa.s3314.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003314.1 Hibiscus syriacus cultivar Beakdansim tig00006976_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  267825

Tables:   1   2   

This is table  2  of  2  ( 190 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
190806--190865	24	2.5	25	72	22	56	51	6	0	41	1.28
190851--190988	23	5.6	23	72	16	107	42	10	2	44	1.50
190851--190988	26	5.5	26	79	10	137	42	10	2	44	1.50
190845--190988	49	2.9	49	78	9	157	43	10	2	44	1.50
191410--191480	14	5.1	14	74	6	63	43	9	2	43	1.52
191427--191773	49	6.9	49	83	10	441	44	10	0	43	1.43
191427--191773	98	3.4	99	84	11	488	44	10	0	43	1.43
191561--191801	109	2.2	108	94	2	412	46	11	0	42	1.43
191655--191745	25	3.7	26	66	21	61	48	12	0	39	1.40
194945--194971	14	1.9	14	100	0	54	74	14	3	7	1.18
195549--195583	15	2.2	16	90	5	54	0	31	0	68	0.90
197424--197481	14	4.2	15	79	14	54	34	0	3	62	1.12
197424--197481	26	2.2	26	84	6	73	34	0	3	62	1.12
198833--198866	2	17.0	2	100	0	68	50	0	0	50	1.00
199757--199790	7	5.1	7	86	13	54	14	0	0	85	0.60
199766--199790	12	2.1	12	100	0	50	16	0	0	84	0.63
200810--200879	22	3.2	21	76	15	61	21	7	8	62	1.47
208794--209444	137	4.8	136	89	1	907	34	24	15	25	1.95
209718--209760	18	2.4	18	88	3	61	39	34	18	6	1.78
211205--211277	30	2.4	30	95	0	128	30	24	20	24	1.99
211260--211388	63	2.1	61	87	7	188	32	20	20	27	1.97
211263--211390	31	4.1	31	80	9	152	33	21	18	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
212574--212618	21	2.1	21	87	0	63	15	24	28	31	1.96
215757--215816	30	2.0	30	100	0	120	33	23	20	23	1.97
215818--215941	31	3.9	32	74	11	96	33	17	18	30	1.94
215818--215939	63	2.0	62	82	8	149	31	18	18	31	1.95
217127--217171	21	2.1	21	87	0	63	15	24	28	31	1.96
218415--218452	2	19.0	2	100	0	76	50	0	0	50	1.00
219342--219586	134	1.8	135	93	3	433	40	8	10	41	1.69
221239--221268	2	15.5	2	93	6	53	50	0	0	50	1.00
221257--221296	20	1.9	22	85	10	57	37	0	25	37	1.56
224074--224129	26	2.2	26	84	6	71	0	17	21	60	1.36
224577--224615	3	13.0	3	88	0	60	61	2	0	35	1.10
224848--225331	45	10.7	45	96	0	887	35	19	23	21	1.96
226000--226076	22	3.5	22	80	3	93	36	14	14	35	1.86
230605--230668	11	6.2	10	79	17	69	0	10	3	85	0.69
230608--230670	1	63.0	1	74	0	54	0	9	3	87	0.65
230599--230670	22	3.2	21	78	11	63	0	12	2	84	0.72
230614--230670	13	4.5	12	80	10	69	0	10	1	87	0.61
230599--230685	12	7.7	11	76	14	70	0	16	2	81	0.79
230608--230669	6	10.7	6	83	10	67	0	9	3	87	0.66
235599--235659	18	3.2	18	73	17	52	67	0	4	27	1.11
241309--241397	29	3.1	29	98	0	169	14	31	35	17	1.91
241443--241621	15	11.1	15	73	16	144	21	7	53	17	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
241430--241556	65	1.9	66	95	3	229	23	9	50	16	1.74
241435--241648	50	4.3	48	82	12	220	21	8	52	17	1.71
241433--241625	65	3.0	64	82	11	214	22	8	52	17	1.71
241445--241620	82	2.2	82	83	5	223	21	7	52	17	1.70
241508--241648	50	2.8	51	93	5	245	20	7	53	18	1.69
242076--242119	21	2.1	21	91	0	70	29	0	15	54	1.42
242096--242158	28	2.2	30	91	5	103	31	0	11	57	1.34
242662--242706	21	2.2	21	84	4	56	35	0	8	55	1.31
242962--243020	26	2.3	25	75	18	66	47	6	3	42	1.46
245140--245296	26	6.3	25	76	15	139	44	2	8	43	1.49
245504--245536	17	1.9	17	93	0	57	36	6	12	45	1.66
245450--245529	24	3.3	23	71	21	67	38	3	8	48	1.52
247898--247988	45	2.0	47	87	8	134	46	12	0	41	1.41
248185--248250	4	16.5	4	75	9	55	1	34	0	63	1.04
248175--248250	25	2.9	25	92	5	116	2	36	0	60	1.11
248312--248363	25	2.1	25	92	0	86	28	32	9	28	1.89
248484--248530	23	2.0	23	100	0	94	21	8	44	25	1.80
248517--248548	13	2.5	13	94	0	55	31	3	46	18	1.65
248549--248657	29	3.8	29	92	2	175	22	31	32	14	1.94
248652--248739	43	2.0	43	100	0	176	20	35	23	20	1.96
248739--248861	35	3.5	35	95	0	219	17	20	33	28	1.96
248895--248973	35	2.3	35	100	0	158	18	20	34	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
249404--249434	2	15.5	2	100	0	62	51	0	0	48	1.00
263141--263196	28	2.0	28	96	0	103	41	35	8	14	1.77
264199--264231	16	2.0	17	94	5	59	24	21	24	30	1.99
267689--267741	18	2.9	18	72	10	54	58	5	11	24	1.54

Tables:   1   2

The End!