genome.fa.s3320.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003320.1 Hibiscus syriacus cultivar Beakdansim tig00006992_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  341838

Tables:   1   2   

This is table  2  of  2  ( 186 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205895--206125	20	11.6	20	84	8	249	35	25	17	21	1.95
206808--206854	24	2.0	24	87	8	69	25	14	21	38	1.92
209335--209545	33	6.2	33	76	14	189	45	18	21	14	1.85
209416--209551	19	7.7	19	78	15	157	44	16	21	16	1.86
209377--209551	52	3.3	52	94	0	296	44	16	22	16	1.86
209560--209657	19	5.4	19	84	13	143	15	21	17	45	1.84
209541--209657	53	2.2	53	95	1	209	14	23	17	43	1.87
209764--209800	14	2.6	14	91	0	65	45	21	0	32	1.52
211781--211837	14	3.7	14	77	20	60	45	22	21	10	1.82
211762--211854	33	2.8	33	95	0	168	47	21	20	10	1.80
211725--211859	19	7.6	19	76	16	128	45	23	19	11	1.82
211855--211983	19	7.3	19	73	17	116	9	17	27	45	1.78
211855--211946	33	2.8	33	91	3	141	8	18	27	45	1.78
212031--212313	93	3.1	93	98	0	550	45	19	12	22	1.83
214020--214123	14	6.7	14	76	20	100	44	22	25	8	1.81
214012--214109	33	3.0	33	100	0	196	45	20	24	9	1.80
214020--214134	47	2.4	47	85	5	135	46	20	24	8	1.79
214157--214213	14	3.7	14	75	20	60	8	24	22	43	1.81
214141--214221	33	2.5	33	95	0	144	8	22	22	46	1.78
214198--214273	21	3.7	21	83	3	109	11	25	17	46	1.82
214197--214274	41	1.9	41	97	0	147	12	25	16	44	1.83
214353--214423	33	2.2	33	92	0	115	47	18	22	11	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214605--214659	22	2.5	22	81	0	74	20	16	40	23	1.91
214806--214939	20	6.7	20	83	6	164	18	17	27	35	1.94
214805--214939	40	3.3	40	82	5	182	18	17	27	36	1.94
228993--229031	15	2.6	15	88	8	53	71	7	10	10	1.30
231365--231397	14	2.4	14	94	0	57	33	24	24	18	1.97
233266--233305	14	3.1	13	89	10	64	55	0	0	45	0.99
234056--234123	31	2.2	31	83	0	82	42	13	25	19	1.87
236695--236729	17	2.1	17	100	0	70	11	22	48	17	1.79
236754--236820	19	3.5	19	75	13	66	29	28	25	16	1.97
236766--236821	29	1.9	29	85	0	76	30	26	25	17	1.97
236752--236820	9	7.3	9	75	6	57	28	27	27	15	1.96
236795--236841	20	2.4	20	89	3	69	36	25	21	17	1.94
243957--243987	7	4.4	7	91	0	53	29	29	25	16	1.96
243984--244032	5	9.8	5	86	8	73	2	22	55	20	1.54
248474--248518	20	2.4	19	85	10	65	20	24	8	46	1.78
248481--248518	20	1.9	20	94	0	67	21	23	10	44	1.83
251342--251368	2	13.5	2	100	0	54	48	0	0	51	1.00
253013--253123	57	2.0	56	81	1	132	20	32	9	36	1.86
255897--256056	29	5.7	28	75	12	123	35	6	1	55	1.37
256125--256185	23	2.7	23	80	12	63	47	0	1	50	1.10
256900--256952	21	2.5	21	75	9	54	75	0	5	18	0.99
257166--257516	27	12.8	27	94	2	603	25	11	7	55	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
257166--257516	137	2.5	137	95	0	630	25	11	7	55	1.60
258718--258797	23	3.5	23	84	0	88	10	10	18	61	1.55
274835--275424	213	2.8	211	87	2	781	31	21	18	28	1.97
278382--278409	2	14.0	2	100	0	56	50	0	0	50	1.00
279793--279840	17	2.6	17	83	9	60	43	0	0	56	0.99
280776--280818	21	2.0	21	86	0	59	13	6	9	69	1.35
281376--281437	19	3.2	20	84	6	74	53	0	1	45	1.10
281519--281600	42	2.0	42	85	0	110	50	14	3	31	1.61
281864--281893	13	2.3	13	94	0	51	16	33	33	16	1.92
303803--303865	31	2.0	31	96	0	117	22	38	22	17	1.93
303900--303972	20	3.7	20	94	3	121	41	4	23	31	1.73
309901--309962	31	1.9	33	83	6	83	29	6	6	58	1.48
319949--320006	29	2.0	29	86	0	80	15	25	25	32	1.95
320051--320105	14	4.2	14	77	17	55	23	34	30	10	1.89
320046--320100	24	2.3	24	90	0	83	21	36	27	14	1.93
320087--320155	33	2.1	33	88	0	102	24	27	36	11	1.90
320929--320958	3	10.0	3	100	0	60	33	0	0	66	0.92
321726--321795	11	6.4	11	74	14	56	62	2	1	32	1.18
321943--322005	34	1.9	32	81	12	74	49	1	1	47	1.20
329130--329174	2	22.5	2	100	0	90	51	0	0	48	1.00
329619--329816	86	2.3	87	89	3	294	45	10	2	40	1.52
340382--340506	57	2.2	56	81	9	148	33	16	12	37	1.86

Tables:   1   2

The End!