genome.fa.s3328.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003328.1 Hibiscus syriacus cultivar Beakdansim tig00007009_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121573

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1918--1962	22	2.1	21	83	4	54	73	6	0	20	1.05
12048--12109	20	3.0	20	68	15	54	12	24	37	25	1.91
12069--12106	20	1.9	20	88	0	58	15	26	36	21	1.93
23991--24022	6	5.3	6	96	0	55	46	0	0	53	1.00
30243--30287	21	2.1	21	87	0	63	31	28	24	15	1.96
31921--31986	22	3.0	22	97	0	123	19	27	27	25	1.99
35070--35114	21	2.1	21	87	0	63	31	28	24	15	1.96
36756--36821	22	3.0	22	97	0	123	19	27	27	25	1.99
38491--38697	105	2.0	105	80	5	231	28	26	14	31	1.94
40312--40354	20	2.3	19	80	11	52	23	32	6	37	1.82
41352--41378	14	1.9	14	100	0	54	25	0	7	66	1.17
44328--44367	2	20.0	2	100	0	80	50	0	0	50	1.00
44801--44895	47	2.0	47	97	0	181	40	4	22	33	1.73
46761--46791	14	2.2	14	100	0	62	45	6	29	19	1.75
48147--48209	31	2.0	31	93	0	108	34	9	28	26	1.88
54910--55060	78	1.9	78	84	0	203	35	13	19	31	1.90
58491--58650	29	5.6	29	88	2	218	36	5	23	33	1.79
61115--61175	32	1.9	31	83	9	79	24	14	18	42	1.88
65608--65740	63	2.1	63	90	0	203	36	34	8	21	1.83
67740--67857	45	2.5	46	78	10	134	30	22	18	28	1.97
68079--68117	17	2.3	17	100	0	78	66	20	7	5	1.36
70007--70065	24	2.5	24	91	0	91	40	5	18	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73719--73805	23	3.9	23	86	3	115	25	26	22	25	2.00
73701--73805	46	2.3	46	80	8	117	24	26	22	25	2.00
75380--75423	21	2.1	21	82	0	52	6	38	18	36	1.77
83149--83188	5	8.0	5	97	0	71	42	0	20	37	1.52
84608--84636	2	14.5	2	100	0	58	51	0	0	48	1.00
85153--85224	37	1.9	37	82	0	90	30	8	9	51	1.64
88535--88594	32	1.9	31	83	10	77	46	5	3	45	1.41
92061--92155	18	5.3	18	75	7	68	28	3	33	34	1.73
97548--97592	21	2.1	21	87	0	63	31	28	24	15	1.96
98423--98518	32	3.0	32	76	14	117	29	16	18	35	1.93
98424--98521	31	3.2	30	77	11	108	29	18	18	33	1.95
98510--98632	30	4.1	30	95	1	212	21	21	25	30	1.99
102456--102500	21	2.1	21	87	0	63	31	28	24	15	1.96
103332--103427	32	3.0	32	79	14	126	29	17	18	34	1.94
103419--103571	30	5.1	30	92	0	245	22	21	24	32	1.98
103843--103894	2	26.0	2	92	0	86	46	1	1	50	1.23
108386--108412	2	13.5	2	100	0	54	48	0	0	51	1.00
108667--108703	19	1.9	19	88	0	56	32	27	16	24	1.96
108750--108801	21	2.5	21	81	6	61	25	19	23	32	1.97
108790--108900	41	2.7	41	88	2	134	31	24	21	22	1.98
108831--109022	61	3.1	61	86	4	228	30	25	20	23	1.99
108810--109057	102	2.4	102	95	0	433	30	25	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108872--109057	61	3.0	61	85	4	216	30	25	19	24	1.98
108810--109057	41	6.1	40	84	6	200	30	25	20	23	1.99
109880--109935	24	2.3	24	93	0	94	25	16	19	39	1.91
110125--110161	14	2.6	14	91	4	56	51	21	21	5	1.68
112199--112233	18	1.9	18	94	0	61	54	25	2	17	1.57
112414--112655	20	12.7	20	77	11	222	35	23	19	21	1.96
112414--112703	40	7.7	40	72	15	206	35	22	19	22	1.96
112439--112748	54	5.6	54	79	6	273	36	21	19	22	1.95
112415--112622	74	2.8	73	79	6	240	36	22	19	21	1.96
112661--112703	20	2.2	20	86	0	59	30	18	20	30	1.97
112844--112923	30	2.4	34	80	20	114	55	15	3	26	1.57
112859--112924	30	2.2	30	100	0	132	54	13	3	28	1.54
114304--114411	42	2.6	41	76	16	105	23	17	37	22	1.94
114304--114410	21	5.1	21	71	4	90	22	17	37	22	1.94
114823--114866	20	2.2	20	100	0	88	52	22	11	13	1.72
114872--114924	20	2.7	20	87	0	88	33	18	20	26	1.96
114984--115177	20	10.6	20	64	22	86	19	19	21	39	1.93
114981--115169	54	3.5	54	86	2	281	21	19	20	38	1.93
115296--115357	31	2.0	31	87	9	90	51	17	8	22	1.71
117163--117218	20	2.8	20	91	0	85	50	21	16	12	1.78
117166--117228	20	3.2	20	86	0	72	42	22	15	19	1.88
117655--117701	22	2.1	22	92	0	76	21	10	42	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117907--117963	20	2.8	20	83	2	60	29	19	22	28	1.98
117930--118004	19	3.8	19	77	11	71	22	17	26	33	1.96
118352--118597	78	3.2	77	87	2	323	19	28	25	26	1.99
118457--118501	24	1.9	23	90	4	72	11	35	26	26	1.90

Tables:   1

The End!