Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003343.1 Hibiscus syriacus cultivar Beakdansim tig00007041_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125849

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1202--1234
3
11.0
3
100
0
66
33
0
0
66
0.92
1884--1965
40
2.1
40
82
8
98
53
3
0
42
1.18
2545--2609
2
33.5
2
80
11
55
55
1
1
41
1.18
4713--4751
4
9.8
4
82
0
51
48
23
2
25
1.63
7444--7654
76
2.8
76
92
3
352
27
1
10
60
1.39
8235--8268
17
2.0
17
88
0
50
23
0
2
73
0.97
8896--9011
5
22.8
5
73
6
90
20
6
2
70
1.20
8895--8952
26
2.2
26
81
0
71
15
5
3
75
1.11
12819--12884
20
3.2
20
70
4
60
31
19
24
24
1.98
12824--12937
42
2.7
41
82
6
149
31
22
20
25
1.98
13107--13214
42
2.6
41
77
4
117
32
22
16
28
1.96
12804--13640
277
3.0
274
86
3
1128
34
20
15
28
1.94
13378--13491
42
2.7
41
84
6
140
31
22
19
26
1.98
13528--13671
52
2.6
54
77
9
141
41
20
9
28
1.83
21377--21408
16
2.0
16
93
0
55
43
3
0
53
1.16
23009--23077
29
2.4
29
95
0
129
50
14
15
18
1.78
25121--25327
74
2.8
76
93
3
350
26
1
12
59
1.41
28858--28996
74
1.9
74
81
3
172
37
13
15
33
1.86
40626--40787
58
2.8
60
82
5
188
30
22
4
41
1.75
40640--40787
60
2.5
58
81
8
174
31
23
4
41
1.73
44112--44184
34
2.1
34
97
0
137
28
15
36
19
1.92
50012--50067
17
3.3
17
76
16
53
28
0
5
66
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49989--50039
21
2.3
23
90
6
79
25
0
3
70
1.04
49989--50040
22
2.3
23
83
9
72
25
0
3
71
1.03
52411--52710
81
3.7
80
81
6
313
32
22
21
23
1.98
54650--54710
23
2.7
23
87
5
79
40
16
16
26
1.89
54792--54868
16
4.8
16
90
0
127
35
18
9
37
1.82
54792--54868
32
2.4
32
97
0
145
35
18
9
37
1.82
55578--55606
2
14.5
2
100
0
58
48
0
0
51
1.00
57515--57561
23
2.0
23
84
8
60
27
12
21
38
1.90
59010--59072
21
3.0
22
75
15
78
42
14
1
41
1.55
59775--59835
23
2.6
23
76
2
68
42
18
27
11
1.84
73850--73923
31
2.4
30
86
4
94
28
32
25
13
1.94
76289--76327
13
3.1
13
92
3
62
43
23
15
17
1.87
84246--84320
2
37.5
2
100
0
150
50
0
0
49
1.00
86706--86738
17
2.0
17
88
5
50
60
0
0
39
0.97
87143--87184
22
1.9
22
90
0
66
42
0
9
47
1.36
87206--87264
31
1.9
31
96
0
109
42
8
6
42
1.61
87469--87537
32
2.2
32
97
0
129
27
10
24
37
1.88
88979--89019
2
20.5
2
100
0
82
51
0
0
48
1.00
94087--94151
29
2.2
29
97
0
121
35
10
7
46
1.68
103309--103338
2
15.0
2
100
0
60
0
50
0
50
1.00
103878--103923
22
2.0
23
87
4
67
47
13
10
28
1.76
115164--115207
21
2.1
21
83
8
54
50
6
2
40
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
122950--122978
12
2.3
13
94
5
51
31
0
68
0
0.89
123385--123480
47
2.0
47
95
0
174
36
14
16
32
1.89

Tables:   1

The End!