Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003409.1 Hibiscus syriacus cultivar Beakdansim tig00007181_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  462136

Tables:   1   2   3   

This is table  3  of  3  ( 268 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
424610--424654
5
8.6
5
95
2
72
80
2
0
17
0.82
427107--427361
35
7.3
35
69
18
113
41
7
5
45
1.53
427107--427196
34
2.5
36
80
12
112
43
5
5
45
1.50
427346--427390
2
23.0
2
95
4
83
48
0
0
51
1.00
427779--427831
20
2.7
20
93
0
88
13
16
35
33
1.88
433948--433987
18
2.1
20
86
9
57
12
17
5
65
1.44
434571--434613
3
14.3
3
80
0
50
55
0
4
39
1.20
434571--434635
12
5.5
12
76
10
53
58
0
3
38
1.14
434605--434645
20
2.0
20
86
9
57
63
2
0
34
1.08
435942--436009
33
2.1
33
91
0
109
38
22
25
14
1.92
440718--440755
18
2.2
18
86
9
53
13
18
7
60
1.56
441340--441382
3
14.3
3
80
0
50
55
0
2
41
1.12
441340--441403
9
6.9
9
77
7
65
56
0
1
42
1.09
442729--442795
33
2.0
33
91
0
107
40
22
22
14
1.90
443326--443372
20
2.3
20
96
0
85
10
17
34
38
1.84
446657--446699
3
14.3
3
80
0
50
55
0
4
39
1.20
446657--446721
12
5.5
12
76
10
53
58
0
3
38
1.14
446691--446731
20
2.0
20
86
9
57
63
2
0
34
1.08
448044--448111
33
2.1
33
91
0
109
38
22
25
14
1.92
448643--448689
20
2.3
20
92
0
76
10
17
31
40
1.83
452609--452650
16
2.5
17
84
7
50
14
14
7
64
1.48
452614--452650
18
2.2
18
85
9
51
13
13
8
64
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
453213--453277
24
2.7
24
78
4
69
53
0
9
36
1.33
453259--453305
20
2.3
20
85
7
60
61
2
0
36
1.08
454497--454632
42
3.3
41
81
7
143
36
22
16
25
1.95
454222--454793
208
2.7
208
88
1
806
34
18
19
27
1.95
455169--455202
6
5.3
6
86
13
50
17
0
2
79
0.86
455508--455588
34
2.4
33
89
4
126
65
11
20
2
1.36

Tables:   1   2   3

The End!