Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003425.1 Hibiscus syriacus cultivar Beakdansim tig00007216_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67791

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3033--3081
12
4.3
11
75
10
53
4
20
2
73
1.10
3052--3104
9
6.5
8
81
14
56
0
13
1
84
0.69
3052--3107
17
3.4
16
79
13
53
0
12
1
85
0.67
3054--3104
26
2.0
26
84
0
66
0
13
1
84
0.71
3052--3107
8
6.4
9
78
10
55
0
12
1
85
0.67
3359--3408
19
2.6
19
84
12
59
64
2
12
22
1.37
9863--9920
29
2.0
29
96
0
107
24
18
20
36
1.95
13347--13404
30
1.9
30
92
0
98
13
27
24
34
1.93
14487--14525
10
3.9
10
86
0
60
48
0
10
41
1.37
14388--18607
136
30.8
136
84
10
5047
53
6
7
32
1.55
14749--14785
10
3.7
10
96
0
65
51
0
16
32
1.45
14388--18607
283
15.4
264
81
12
3996
53
6
7
32
1.55
14885--14953
10
6.9
10
93
0
120
49
0
13
37
1.42
14749--15098
166
2.1
164
92
2
576
52
4
8
33
1.54
15049--15098
10
5.0
10
87
0
73
48
2
14
36
1.55
15049--15098
20
2.5
20
96
0
91
48
2
14
36
1.55
14623--15369
146
5.1
146
85
10
1043
53
5
8
32
1.55
14623--15242
310
2.0
302
90
4
985
53
5
8
32
1.54
15196--15242
10
4.7
10
83
0
67
48
0
12
38
1.41
15196--15242
20
2.3
20
96
0
85
48
0
12
38
1.41
15379--15574
49
4.2
48
64
17
126
54
6
7
31
1.53
15467--15505
10
3.9
10
93
0
69
48
0
12
38
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15854--15902
10
4.9
10
94
0
89
48
0
12
38
1.41
15729--16319
145
4.1
146
97
0
1096
53
5
8
32
1.56
15999--16047
10
4.9
10
89
0
80
48
0
14
36
1.44
15999--16047
20
2.5
20
100
0
98
48
0
14
36
1.44
16145--16193
10
4.9
10
84
0
71
46
0
14
38
1.44
16145--16193
20
2.5
20
96
0
89
46
0
14
38
1.44
16417--16445
10
2.9
10
100
0
58
48
0
10
41
1.37
16542--16579
10
3.8
10
96
0
67
52
0
15
31
1.43
16679--16727
10
4.9
10
80
9
64
44
0
14
40
1.45
16679--16727
20
2.5
20
93
0
80
44
0
14
40
1.45
16826--16862
10
3.7
10
96
0
65
51
0
16
32
1.45
16740--16933
49
4.2
48
64
22
126
55
6
7
30
1.52
16846--17104
126
2.1
116
81
13
356
54
5
7
32
1.52
17088--17126
10
3.9
10
86
0
60
46
0
12
41
1.42
17124--17169
21
2.1
22
84
11
60
54
6
8
30
1.56
17133--17175
21
2.0
21
82
8
52
53
6
6
32
1.55
17000--17331
49
7.2
47
63
18
119
53
6
6
33
1.53
17224--17262
10
3.9
10
89
0
60
48
0
10
41
1.37
17484--17533
10
5.0
10
82
0
64
44
0
14
42
1.44
17485--17533
20
2.5
20
100
0
98
44
0
14
40
1.45
17359--17804
146
3.1
146
95
0
804
53
5
8
32
1.55
17631--17679
10
4.9
10
94
0
89
48
0
12
38
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17811--17853
21
2.0
21
81
0
50
53
6
6
32
1.55
17814--18823
49
21.2
47
61
22
145
52
6
7
32
1.56
18039--18087
10
4.9
10
84
0
71
48
0
12
38
1.41
18039--18087
20
2.5
20
93
0
89
48
0
12
38
1.41
18185--18223
10
3.9
10
86
0
60
46
0
12
41
1.42
18184--18223
20
2.0
20
95
0
71
45
0
12
42
1.42
18322--18370
10
4.9
10
89
0
80
48
0
14
36
1.44
18322--18370
20
2.5
20
100
0
98
48
0
14
36
1.44
18468--18506
10
3.9
10
89
0
60
48
0
10
41
1.37
18505--18709
102
2.0
102
98
0
392
53
8
6
31
1.57
18369--18836
248
1.9
245
91
5
781
54
7
7
31
1.55
18537--18697
53
3.1
53
61
20
122
56
9
4
29
1.52
18706--18754
10
4.9
10
84
0
71
48
0
12
38
1.41
18706--18754
20
2.5
20
96
0
89
48
0
12
38
1.41
22968--23022
22
2.5
21
77
13
58
41
1
1
54
1.21
25041--25089
25
2.0
25
88
4
73
67
14
2
16
1.33
26217--26470
138
1.8
138
83
6
336
44
13
13
27
1.82
27690--27751
29
2.1
29
90
0
97
16
40
11
32
1.83
27820--27869
10
5.0
10
82
0
55
26
30
0
44
1.55
27894--27938
23
2.0
22
83
12
56
31
0
4
64
1.13
27908--27946
18
2.2
18
95
4
71
33
0
2
64
1.08
37110--37155
3
15.3
3
100
0
92
67
0
0
32
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37235--37324
35
2.6
35
84
8
105
47
8
1
42
1.42
37293--37347
23
2.3
23
84
9
67
45
9
1
43
1.46
37326--37486
39
4.2
39
83
7
204
44
5
2
47
1.39
37313--37561
77
3.4
76
81
13
297
44
7
2
45
1.43
37452--37476
13
1.9
13
100
0
50
52
8
0
40
1.31
37408--37554
70
2.1
69
87
9
210
46
8
1
43
1.43
37447--37513
30
2.2
31
94
2
118
46
8
1
43
1.44
37478--37561
40
2.1
40
91
2
134
45
9
1
44
1.44
47359--47392
18
1.9
17
88
5
50
70
2
0
26
1.01
47495--47522
14
2.0
14
100
0
56
42
7
7
42
1.59
47418--47759
39
9.2
38
79
14
306
45
7
2
45
1.43
47571--47681
14
8.5
13
67
16
59
46
5
0
47
1.25
47607--47752
69
2.1
69
86
6
197
47
7
1
43
1.40
47646--47708
30
2.1
31
87
3
92
46
4
3
46
1.40
47963--48073
24
4.5
24
68
17
59
9
16
0
74
1.05
48031--48059
14
2.1
14
100
0
58
6
20
0
72
1.07
48496--48551
19
2.8
20
75
22
64
21
21
7
50
1.72
48396--48715
119
2.7
117
83
4
381
25
20
15
39
1.91
48953--49264
100
3.1
101
86
1
419
39
10
17
32
1.85
49187--49331
66
2.2
67
79
10
156
40
11
18
29
1.86
54424--54655
59
3.9
58
73
12
163
29
22
11
35
1.90
59534--63007
81
43.1
80
85
3
4410
31
22
11
34
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64405--64460
20
2.8
20
91
0
85
25
25
19
30
1.98

Tables:   1

The End!