genome.fa.s3440.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003440.1 Hibiscus syriacus cultivar Beakdansim tig00007254_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104941

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5196--5263	23	3.0	23	77	0	91	33	13	23	29	1.93
11933--12041	35	3.0	36	87	5	166	47	17	4	30	1.67
16592--16653	21	3.3	21	66	29	66	45	20	3	30	1.67
16542--16687	35	4.2	35	86	5	188	47	18	2	31	1.63
18193--18229	2	18.5	2	100	0	74	51	0	0	48	1.00
22268--22336	30	2.3	30	80	5	77	46	4	1	47	1.31
23347--23376	7	4.3	7	91	0	51	13	43	0	43	1.43
24994--25044	23	2.1	25	86	13	72	43	1	0	54	1.11
31088--31219	60	2.2	60	86	0	183	32	15	6	45	1.72
42095--42139	22	2.0	22	82	8	54	73	4	0	22	1.01
43242--43362	23	5.3	23	78	4	136	22	25	1	50	1.58
43325--43372	23	2.1	23	88	0	69	33	22	0	43	1.54
49984--50050	25	2.5	27	85	9	84	70	4	0	25	1.06
49981--50076	25	4.1	22	77	14	79	66	4	1	28	1.16
50002--50054	14	3.9	14	75	24	51	71	3	0	24	1.02
63153--63200	23	2.1	23	88	0	69	35	12	18	33	1.89
63320--64933	405	4.0	405	98	1	3102	38	12	8	40	1.74
67391--68099	183	3.9	184	98	0	1334	34	15	15	35	1.89
67391--68099	367	1.9	367	97	1	1332	34	15	15	35	1.89
68089--68141	21	2.5	21	84	6	63	37	11	11	39	1.77
69557--69630	3	24.7	3	78	0	76	25	33	5	35	1.79
69565--69655	42	2.2	42	87	0	128	21	32	7	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69570--69637	9	7.6	9	73	6	57	23	33	7	35	1.83
69561--69658	6	16.3	6	76	8	56	21	32	7	38	1.81
71020--72632	199	8.1	199	97	1	3010	31	15	14	38	1.88
71020--72632	594	2.7	595	97	0	3015	31	15	14	38	1.88
71020--72632	395	4.1	397	97	1	3006	31	15	14	38	1.88
72713--72757	19	2.4	19	92	0	72	57	8	2	31	1.41
74548--74613	33	2.0	33	87	0	96	24	45	1	28	1.62
76907--76949	20	2.3	18	82	17	61	20	16	9	53	1.70
76912--76957	20	2.3	19	89	10	74	19	15	8	56	1.65
77078--77123	20	2.3	20	89	10	76	17	17	10	54	1.70
77187--77627	226	2.0	222	91	4	717	39	7	8	44	1.62
85657--85715	29	2.0	29	100	0	118	23	13	13	49	1.78
90344--90402	29	2.0	29	100	0	118	23	13	13	49	1.78
92840--92877	6	6.7	6	94	5	62	36	10	0	52	1.36
101160--101199	17	2.3	19	87	12	59	45	0	2	52	1.14
104011--104144	41	3.3	40	78	3	142	36	20	18	24	1.95
103992--104124	61	2.2	60	82	6	160	33	22	19	24	1.97
104033--104146	20	5.7	20	83	2	147	39	19	19	21	1.93
104033--104159	40	3.2	39	81	7	139	38	20	18	22	1.93
104146--104199	20	2.7	20	91	0	90	29	24	16	29	1.97

Tables:   1

The End!