Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003444.1 Hibiscus syriacus cultivar Beakdansim tig00007265_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65928

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
119--322
21
9.9
21
65
12
109
36
24
19
20
1.95
221--288
19
3.5
18
73
15
64
38
23
19
19
1.93
91--309
42
5.3
41
92
2
334
37
22
18
21
1.94
284--334
21
2.4
21
86
0
66
33
31
19
15
1.93
2303--2327
2
12.5
2
100
0
50
52
0
0
48
1.00
12837--12967
56
2.3
57
80
1
147
29
16
23
30
1.96
15471--15535
30
2.2
30
97
0
121
12
30
24
32
1.92
18310--18341
13
2.5
13
100
0
64
25
46
0
28
1.53
20003--20052
26
2.0
25
96
4
91
50
6
4
40
1.46
20113--20152
2
20.0
2
85
10
55
45
0
2
52
1.14
22320--22350
3
10.3
3
100
0
62
0
32
0
67
0.91
22657--22682
3
8.7
3
100
0
52
69
0
0
30
0.89
24353--24398
22
2.1
22
100
0
92
47
4
17
30
1.67
24657--24744
30
2.9
30
78
9
99
3
6
29
60
1.39
24657--24764
30
3.6
30
78
9
96
2
7
26
62
1.35
25864--25942
31
2.5
31
83
0
95
41
17
7
32
1.78
28708--28783
21
3.6
21
76
13
59
38
23
19
18
1.93
30388--30467
40
2.0
39
81
11
92
17
11
7
63
1.49
32612--32684
31
2.4
31
88
0
101
39
9
8
42
1.67
33560--33603
17
2.5
17
79
17
54
6
20
0
72
1.07
33901--33946
24
1.9
24
86
0
65
56
8
4
30
1.49
34706--34759
20
2.7
20
85
0
81
22
27
18
31
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34874--34899
3
8.7
3
100
0
52
0
0
30
69
0.89
36136--36161
4
6.5
4
100
0
52
26
0
0
73
0.84
36243--36302
30
2.0
30
96
0
111
31
6
6
55
1.52
38639--38677
20
2.0
20
84
0
51
25
15
12
46
1.81
40882--40944
23
3.0
21
75
22
60
76
0
17
6
0.99
40888--40946
22
2.7
23
82
10
70
77
0
16
5
0.93
46281--46336
15
3.7
15
90
2
76
58
10
21
8
1.58
52653--52729
2
39.5
2
85
5
104
54
0
0
45
0.99
52777--53011
85
2.8
83
82
7
260
31
17
20
30
1.96
52777--53048
85
3.2
85
76
8
209
30
18
20
30
1.96
59372--59463
38
2.4
39
88
1
150
22
19
28
29
1.98
61065--61104
18
2.2
18
86
4
53
42
10
2
45
1.51
61084--61508
72
5.8
72
83
5
453
29
20
9
40
1.83
61084--61494
73
5.6
73
83
6
451
29
20
9
40
1.84
61084--61508
145
2.9
144
85
4
541
29
20
9
40
1.83
61830--61906
36
2.1
36
88
4
111
31
11
12
44
1.79
61664--61971
101
3.1
101
80
5
345
32
14
11
40
1.83
61881--62036
65
2.4
63
79
11
163
32
14
11
42
1.81
62087--62140
28
2.0
28
85
3
74
31
25
7
35
1.84
62555--62783
43
5.3
43
85
7
302
40
10
18
31
1.83
62553--62783
88
2.7
86
88
6
342
40
9
18
31
1.83

Tables:   1

The End!