genome.fa.s3491.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003491.1 Hibiscus syriacus cultivar Beakdansim tig00007387_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  310206

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2--6312	7	918.4	7	93	5	9049	33	42	10	14	1.78
6313--6353	20	2.0	20	90	9	66	39	19	19	21	1.93
7214--7267	24	2.2	24	90	0	81	20	16	20	42	1.89
9804--9912	33	3.3	33	81	2	146	42	20	23	13	1.88
9832--9859	14	2.0	14	100	0	56	42	21	21	14	1.88
9804--9865	14	4.0	14	73	20	52	45	20	22	11	1.83
9784--9901	34	3.5	33	81	3	146	40	21	23	14	1.90
9784--9912	67	1.9	67	93	0	222	41	20	23	14	1.90
9912--9974	19	3.3	19	93	0	99	15	15	23	44	1.86
9922--10006	19	4.7	19	77	16	83	12	20	21	45	1.84
11486--11546	21	3.0	20	73	7	59	21	19	36	22	1.95
13570--13632	20	3.2	20	82	8	83	46	17	23	12	1.83
13568--13665	33	2.7	37	75	16	114	46	18	23	11	1.81
13568--13691	33	3.5	34	81	9	110	45	19	23	11	1.82
13568--13713	19	8.1	19	70	18	98	45	18	23	12	1.83
13725--13781	14	3.7	14	72	20	51	10	21	22	45	1.82
13725--13788	33	1.9	33	96	0	119	10	20	20	48	1.79
13740--13844	20	5.6	19	76	16	96	11	18	20	50	1.77
14314--14527	20	10.6	20	78	8	184	19	18	25	37	1.94
14314--14486	40	4.3	40	85	3	213	19	18	24	37	1.94
14515--14596	21	3.9	21	71	6	67	23	20	23	32	1.98
14493--14588	42	2.3	42	76	5	97	22	19	22	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45517--45587	24	3.0	24	76	17	85	29	25	26	18	1.98
45827--45895	30	2.3	30	89	0	102	31	23	5	39	1.78
45844--45909	30	2.2	30	86	0	87	31	25	1	40	1.65
62121--62145	3	8.3	3	100	0	50	68	0	0	32	0.90
62593--62641	24	2.0	24	100	0	98	12	20	30	36	1.89
64099--64261	42	3.9	42	93	0	281	22	44	4	28	1.71
64102--64211	21	5.2	21	60	16	57	21	45	3	29	1.69
66719--66782	30	2.1	30	85	0	83	34	28	18	18	1.95
67525--67576	19	2.7	19	100	0	104	26	26	17	28	1.97
67460--67639	83	2.2	82	86	4	245	28	19	20	32	1.97
67544--67700	64	2.4	65	84	4	203	28	19	18	33	1.95
82789--82831	18	2.4	18	88	7	61	74	0	4	20	1.00
87534--87633	2	53.0	2	72	11	68	48	0	0	52	1.00
87650--87693	13	3.5	13	93	3	72	13	15	52	18	1.75
89082--89125	23	1.9	23	90	0	70	27	25	29	18	1.98
89421--89477	2	28.5	2	100	0	114	50	0	0	49	1.00
90233--90284	27	1.9	28	84	7	72	38	21	0	40	1.53
94069--94109	14	2.9	15	82	10	59	68	14	2	14	1.32
94069--94115	14	3.1	15	79	14	53	68	12	4	14	1.36
95872--96002	21	6.4	21	70	18	91	51	0	1	46	1.15
95874--95972	44	2.3	43	87	5	137	51	1	2	45	1.19
95954--95994	15	3.0	14	86	13	59	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98804--98841	7	5.4	7	93	0	67	26	26	28	18	1.98
98838--98887	22	2.3	22	92	0	82	10	20	52	18	1.73
98831--98867	17	2.2	17	95	0	65	13	21	48	16	1.80
98893--98984	9	9.7	9	72	11	67	26	28	28	17	1.98
98885--98985	19	5.3	19	90	1	139	24	27	28	18	1.98
98885--98955	10	7.4	10	77	15	78	22	29	29	18	1.97
106156--106222	22	3.0	22	91	4	98	13	22	46	17	1.83
106163--106223	17	3.3	17	77	20	68	13	21	47	18	1.82
106221--106318	19	5.1	19	78	13	92	27	27	27	17	1.98
106219--106317	9	10.3	9	77	10	81	27	27	29	16	1.97
106220--106317	29	3.4	28	84	5	115	27	27	28	16	1.97
113702--113757	20	2.8	20	80	0	67	28	25	19	26	1.99
115927--116045	24	5.0	24	83	6	143	26	14	18	40	1.89
118004--118038	2	17.5	2	100	0	70	48	0	0	51	1.00
129984--130012	6	4.8	6	100	0	58	51	17	0	31	1.45
136540--136607	34	2.0	34	100	0	136	23	23	20	32	1.98
137615--137824	65	3.3	63	80	11	221	30	23	19	26	1.98
145297--145335	2	20.0	2	94	5	71	51	0	0	48	1.00
146027--146134	45	2.4	46	87	4	148	29	20	19	30	1.97
149204--149237	2	17.0	2	100	0	68	50	0	0	50	1.00
154297--154358	21	3.0	21	75	15	67	51	0	3	45	1.17
154277--154350	21	3.7	19	79	12	67	47	1	2	48	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154277--154356	20	4.0	19	75	16	63	48	1	2	47	1.23
164761--164843	29	2.8	29	90	1	130	43	8	14	33	1.76
168212--168241	15	2.0	15	93	0	51	20	0	23	56	1.42
169530--169612	29	2.8	29	90	1	130	43	8	14	33	1.76
178282--178343	21	3.0	21	97	2	117	29	14	8	48	1.72
178332--178408	33	2.4	32	86	4	118	32	9	14	44	1.76
178883--178912	16	1.9	15	93	6	51	30	6	6	56	1.51
182303--182832	106	5.0	106	93	0	898	22	17	25	34	1.96
190079--190137	21	2.8	21	87	5	84	38	28	8	23	1.84
192714--192843	65	2.0	65	100	0	260	23	23	20	33	1.97
195390--195472	29	2.8	29	85	1	103	43	9	13	33	1.76
198964--198991	12	2.3	12	100	0	56	7	25	7	60	1.48
200083--200165	29	2.8	29	85	1	112	42	10	14	32	1.80
200952--200995	21	2.1	21	83	8	54	36	4	0	59	1.18
204634--204785	6	25.3	6	97	0	286	32	0	32	34	1.63
205851--205900	14	3.5	13	78	19	55	68	4	0	28	1.08
217463--217492	2	15.0	2	100	0	60	50	0	0	50	1.00
219082--219110	3	9.7	3	100	0	58	34	0	34	31	1.58
220689--220728	21	2.0	20	85	5	53	37	2	5	55	1.35
221042--221079	2	19.0	2	100	0	76	50	0	0	50	1.00
228351--228412	22	2.7	23	87	5	81	19	24	32	24	1.98
231970--232009	21	1.9	21	85	10	55	35	7	2	55	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
254909--254946	3	12.7	3	94	0	67	71	0	28	0	0.87
258240--258301	28	2.2	28	97	0	115	59	12	17	9	1.59
260791--260817	3	9.0	3	100	0	54	0	33	0	66	0.92
270351--270384	2	17.0	2	100	0	68	50	0	0	50	1.00
296707--296731	2	12.5	2	100	0	50	52	48	0	0	1.00
303242--303291	21	2.3	22	83	13	59	50	4	2	44	1.32
305412--305469	29	2.0	29	96	0	107	27	15	27	29	1.96
309701--309823	33	3.8	32	82	4	129	21	35	31	10	1.88

Tables:   1

The End!