genome.fa.s3498.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003498.1 Hibiscus syriacus cultivar Beakdansim tig00007396_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  386253

Tables:   1   2   

This is table  2  of  2  ( 190 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
275380--275424	20	2.2	20	88	0	63	35	15	20	28	1.93
275465--275525	20	3.0	20	82	0	86	42	16	13	27	1.85
275518--275566	20	2.5	20	89	0	71	26	24	16	32	1.96
275582--275642	20	3.0	20	90	0	95	40	16	14	27	1.88
275485--275697	97	2.2	96	84	3	266	37	18	15	29	1.91
275433--275663	117	2.0	117	94	0	408	36	19	13	30	1.90
275623--275759	57	2.4	57	88	0	193	37	21	14	26	1.92
276998--277341	170	2.0	171	97	2	647	36	14	20	27	1.92
280427--280484	2	29.0	2	100	0	116	50	0	0	50	1.00
281405--281508	29	3.5	29	76	6	91	38	7	10	43	1.68
281597--281679	28	2.9	28	78	10	87	36	9	14	39	1.79
300143--300195	25	2.0	27	89	7	83	45	16	1	35	1.59
300213--300271	26	2.1	28	87	9	86	44	8	11	35	1.72
300355--300455	31	3.4	29	80	11	82	37	12	9	39	1.77
300724--300748	6	4.2	6	100	0	50	0	64	16	20	1.30
301944--302963	4	259.2	4	93	4	1718	25	1	24	48	1.59
315495--315579	3	28.7	3	95	2	154	34	1	0	64	1.01
316853--316933	36	2.3	36	81	12	96	28	1	6	64	1.25
316993--317026	17	2.0	17	88	11	52	55	2	0	41	1.15
317147--317200	25	2.2	25	90	6	83	50	3	7	38	1.48
319237--319279	14	3.0	15	76	13	54	32	16	2	48	1.58
322357--322386	1	30.0	1	100	0	60	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324623--324887	83	3.2	83	95	1	460	27	13	21	36	1.92
327033--327144	54	2.1	54	93	0	188	37	16	24	21	1.94
327504--327580	22	3.5	22	89	0	118	33	14	12	38	1.84
327980--328658	113	6.0	113	87	4	830	38	15	18	28	1.91
328017--328658	229	2.8	227	86	4	839	38	14	18	28	1.90
328667--328947	115	2.5	114	88	2	404	38	13	19	28	1.90
328491--328835	174	2.0	174	87	3	507	38	12	20	28	1.89
328378--331017	289	9.1	289	99	0	5221	38	12	20	28	1.89
328956--329236	115	2.5	114	88	2	404	38	13	19	28	1.90
328780--329124	174	2.0	174	88	3	516	37	12	20	29	1.89
329245--329525	115	2.5	114	88	2	404	38	13	19	28	1.90
329069--329413	174	2.0	174	88	3	516	37	12	20	29	1.89
329534--329814	115	2.5	114	88	2	404	38	13	19	28	1.90
329358--329702	174	2.0	174	88	3	516	37	12	20	29	1.89
329823--330103	115	2.5	114	88	2	404	38	13	19	28	1.90
329647--329991	174	2.0	174	88	3	516	37	12	20	29	1.89
330112--330392	115	2.5	114	88	2	404	38	13	19	28	1.90
329936--330280	174	2.0	174	88	3	516	37	12	20	29	1.89
330401--330681	115	2.5	114	88	2	404	38	13	19	28	1.90
330225--330569	174	2.0	174	88	3	516	37	12	20	29	1.89
330690--330970	115	2.5	114	88	2	413	38	13	20	28	1.90
330514--330858	174	2.0	174	88	3	516	37	12	20	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331266--331390	3	41.7	3	93	0	214	34	0	0	64	0.99
338795--338859	32	2.1	30	83	11	78	23	9	4	63	1.43
338898--338955	21	2.8	21	77	15	66	67	3	5	24	1.27
339488--339528	22	1.9	21	85	5	55	56	4	2	36	1.34
353349--353424	11	7.0	11	74	3	73	60	2	1	35	1.19
353350--353424	32	2.3	32	86	2	105	60	2	1	36	1.20
358112--358161	16	3.4	16	69	25	56	36	6	16	42	1.72
358107--358160	27	2.0	27	100	0	108	33	7	18	40	1.78
362174--362229	28	2.1	28	83	12	73	51	0	1	46	1.11
362655--362710	26	2.1	28	83	12	73	50	1	0	48	1.11
362666--362722	26	2.2	26	78	9	64	56	0	0	43	0.99
363766--363812	19	2.4	19	85	7	58	38	0	2	59	1.09
364391--364417	2	13.5	2	100	0	54	48	0	0	51	1.00
367273--367338	29	2.3	29	86	0	87	37	12	12	37	1.80
368020--368076	29	2.0	27	89	6	78	15	22	17	43	1.87
368005--368316	156	2.0	156	97	0	588	24	20	16	38	1.92
368353--368424	3	24.0	3	100	0	144	0	66	0	33	0.92
368458--368516	3	19.7	3	100	0	118	0	33	0	66	0.92
368570--368686	3	39.0	3	100	0	234	0	33	0	66	0.92
378943--378972	3	9.7	3	92	7	51	30	0	0	70	0.88
379653--379719	31	2.2	31	89	2	100	47	10	14	26	1.77
384526--384555	10	3.0	10	90	0	51	3	10	26	60	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384563--384620	24	2.4	24	85	0	80	58	20	12	8	1.59
384566--384629	14	4.9	14	69	21	57	59	20	12	7	1.58
385298--385331	2	17.5	2	93	6	61	50	0	0	50	1.00
385416--385472	27	2.1	27	83	6	71	35	15	3	45	1.64

Tables:   1   2

The End!