genome.fa.s3504.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003504.1 Hibiscus syriacus cultivar Beakdansim tig00007406_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  232423

Tables:   1   2   

This is table  1  of  2  ( 214 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4812--4856	19	2.4	19	100	0	90	26	17	31	24	1.97
4826--4902	20	3.7	20	79	14	75	28	18	25	27	1.98
5201--5250	19	2.4	21	80	12	59	22	4	24	50	1.66
5640--5795	32	4.9	33	72	12	105	29	17	19	33	1.95
14192--14282	37	2.5	37	87	5	132	27	9	17	45	1.80
27815--27892	23	3.3	23	81	1	93	33	23	17	25	1.96
27899--28116	103	2.1	103	95	0	391	37	23	12	25	1.91
28902--29063	64	2.5	63	76	8	157	25	21	20	32	1.98
32263--32326	23	2.8	23	85	0	83	26	26	25	21	2.00
32342--32765	103	4.1	103	98	0	812	37	24	13	25	1.91
33243--33280	20	1.9	20	88	0	58	10	31	34	23	1.89
37656--37757	50	2.0	50	100	0	204	56	15	1	25	1.50
37904--37960	30	1.9	30	85	7	80	19	40	19	21	1.92
38341--38387	5	9.4	5	97	0	67	0	34	19	46	1.50
38344--38395	5	10.4	5	93	0	50	1	28	19	50	1.58
41836--41907	36	2.0	36	97	0	135	23	22	25	29	1.99
42740--42776	18	2.1	18	89	0	56	54	13	10	21	1.69
46069--46093	2	12.5	2	100	0	50	48	0	0	52	1.00
47192--47228	20	1.9	19	89	10	58	45	10	24	18	1.81
50717--50822	34	3.3	31	78	7	95	34	0	3	60	1.21
50967--51020	17	3.2	17	72	0	54	31	0	3	64	1.11
52551--52619	21	3.3	21	93	0	111	26	40	13	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52623--52758	42	3.2	42	94	2	229	18	34	26	20	1.96
52623--52758	21	6.5	21	89	6	204	18	34	26	20	1.96
53272--53356	40	2.1	40	88	0	125	60	3	1	35	1.22
53300--53382	34	2.4	34	89	0	121	57	3	3	34	1.33
53270--53382	34	3.0	39	74	15	119	55	4	2	37	1.34
53776--54074	128	2.3	128	95	0	544	34	20	23	21	1.97
55337--55415	33	2.4	32	81	12	90	59	1	0	39	1.06
57852--57965	58	2.0	58	85	3	158	17	19	18	44	1.87
66786--66810	11	2.3	11	100	0	50	92	8	0	0	0.40
72261--72468	101	2.0	103	90	3	332	41	15	12	30	1.84
74901--74950	2	25.0	2	100	0	100	50	0	0	50	1.00
82098--82141	22	2.0	22	86	0	61	54	6	0	38	1.27
82329--82394	31	2.1	31	88	0	96	57	6	3	33	1.38
84042--84167	60	2.1	60	81	8	141	34	12	13	38	1.83
85037--85085	24	2.0	24	84	7	64	63	4	8	24	1.40
90307--90350	21	2.1	21	86	0	61	31	27	25	15	1.96
90859--90905	23	2.0	24	91	4	78	44	0	21	34	1.52
91083--91238	31	5.0	31	92	1	251	21	19	21	37	1.95
94358--94401	21	2.1	21	86	0	61	31	27	25	15	1.96
94912--94958	23	2.0	24	91	4	78	44	0	21	34	1.52
95136--95291	31	5.0	31	92	1	251	21	19	21	37	1.95
98414--98457	21	2.1	21	86	0	61	31	27	25	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98968--99014	23	2.0	24	91	4	78	44	0	21	34	1.52
99192--99347	31	5.0	31	92	1	251	21	19	21	37	1.95
115795--115848	21	2.6	21	90	0	81	42	1	38	16	1.59
118764--118970	90	2.3	90	86	0	288	40	23	11	25	1.88
122378--122431	2	27.0	2	100	0	108	50	0	0	50	1.00
123570--123623	21	2.6	21	93	0	90	25	16	25	31	1.97
123615--123875	20	12.4	20	78	13	224	13	22	23	41	1.88
123615--123875	40	6.2	40	82	12	278	13	22	23	41	1.88
123715--123803	41	2.2	41	97	0	169	17	19	23	39	1.92
123672--123935	132	2.0	131	88	4	397	15	20	24	39	1.91
123888--123959	22	3.4	21	73	11	76	19	19	23	37	1.94
123909--123974	19	3.3	19	72	12	69	19	19	19	40	1.91
123888--123980	41	2.3	41	96	0	168	20	18	22	38	1.93
124059--124089	6	5.2	6	100	0	62	35	48	16	0	1.46
124086--124119	5	6.8	5	100	0	68	41	20	38	0	1.53
124590--124645	6	9.3	6	100	0	112	0	16	50	33	1.45
124732--124788	19	2.8	20	76	7	71	35	21	21	22	1.96
124780--124852	20	3.6	20	74	3	83	36	24	21	16	1.94
124737--124877	41	3.5	41	86	8	175	36	24	19	19	1.95
124777--124881	21	5.1	21	69	4	88	37	26	18	18	1.93
127015--127062	18	2.5	19	86	6	62	25	22	16	35	1.95
131443--131501	20	3.0	20	73	9	66	40	13	15	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131765--131829	34	1.9	34	100	0	130	35	23	18	23	1.96
131817--131875	21	2.8	21	89	5	84	32	20	16	30	1.95
131904--131941	19	2.0	20	89	5	60	23	15	36	23	1.94
132240--132315	22	3.5	22	77	10	75	30	14	21	34	1.93
133246--133287	2	21.5	2	90	4	68	52	0	0	47	1.00
138956--138994	15	2.6	15	95	0	69	35	10	17	35	1.84
139044--139112	15	4.5	15	71	16	52	33	0	15	50	1.45
139182--139303	33	3.7	33	80	8	158	45	6	4	43	1.48
139375--139433	2	31.0	2	86	10	79	45	0	1	52	1.10
139475--139532	26	2.2	27	90	3	91	41	3	1	53	1.28
139485--139532	15	3.4	14	78	18	55	43	4	0	52	1.20
140422--140478	26	2.1	27	81	9	64	40	3	1	54	1.28
151596--151990	20	19.5	20	73	6	193	37	24	17	20	1.93
151596--151990	41	9.7	41	79	7	382	37	24	17	20	1.93
152652--152685	12	2.8	12	90	0	50	55	29	0	14	1.40
152811--152864	24	2.2	24	90	0	81	22	18	18	40	1.91
155356--155443	14	5.6	14	71	23	68	45	19	23	11	1.83
155337--155462	33	3.8	33	94	1	207	44	19	23	13	1.85
155403--155514	52	2.2	52	96	0	206	47	16	21	14	1.82
155370--155547	85	2.1	85	97	0	338	46	17	22	13	1.83
155455--155557	33	3.1	33	97	0	197	46	18	22	12	1.82
155474--155557	14	5.3	14	67	25	51	46	19	22	11	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155337--155557	118	1.9	119	95	0	399	45	18	23	13	1.84
155697--155733	14	2.6	14	91	0	65	45	21	0	32	1.52
155700--155876	83	2.1	84	96	2	331	42	18	2	36	1.65
157169--157291	42	2.9	41	79	7	113	22	17	36	22	1.95
157655--157707	19	2.6	21	82	11	83	49	18	24	7	1.74
157665--157734	19	3.9	19	76	17	87	48	20	21	10	1.78
157692--157748	14	3.7	14	75	20	60	45	22	22	8	1.80
157673--157764	33	2.8	33	93	0	157	46	23	20	8	1.78
157760--157842	19	4.6	19	75	15	77	13	20	22	43	1.86
157894--158019	63	2.0	63	90	3	200	50	15	11	22	1.75
157976--158131	82	1.9	81	92	1	258	44	16	14	25	1.85
159785--159841	14	3.7	14	75	20	60	43	22	24	8	1.81
159777--159858	33	2.5	33	100	0	164	47	19	23	9	1.79
159799--159863	19	3.7	19	74	19	77	44	21	23	10	1.83
159859--159924	19	3.4	19	87	4	87	9	19	21	50	1.75
160440--160597	20	7.7	20	76	12	151	19	17	26	36	1.94
160442--160596	41	3.8	41	89	3	222	19	17	26	36	1.94
160583--160718	20	6.8	20	75	12	100	18	17	21	42	1.89
160438--160616	82	2.2	81	82	6	218	18	16	26	37	1.92
160665--160718	19	2.8	20	91	2	83	14	18	18	48	1.82
161029--161090	26	2.3	27	81	10	74	58	0	1	40	1.08
161066--161127	25	2.7	23	76	18	65	51	1	4	41	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161065--161132	24	2.8	25	74	17	63	54	1	4	39	1.30
163890--163928	19	2.0	20	85	5	53	33	2	2	61	1.23
165147--165193	18	2.6	18	80	19	53	70	4	12	12	1.31
166244--166289	16	3.0	16	78	6	51	73	0	4	21	1.00
167633--167685	21	2.4	23	87	6	74	47	9	0	43	1.36
167565--167787	57	3.7	59	73	19	172	43	7	0	47	1.36
167653--167968	37	8.7	37	84	9	273	44	6	3	45	1.47
167653--167969	111	2.9	111	84	8	368	44	6	3	45	1.46
168186--168267	36	2.3	36	95	4	150	32	18	2	46	1.62
169135--169179	21	2.1	22	83	4	56	44	0	6	48	1.29

Tables:   1   2