genome.fa.s3504.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003504.1 Hibiscus syriacus cultivar Beakdansim tig00007406_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  232423

Tables:   1   2   

This is table  2  of  2  ( 214 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
169448--169488	16	2.6	16	88	11	59	65	0	0	34	0.93
170786--170859	3	25.3	3	78	10	82	58	0	0	41	0.98
170776--170839	9	6.7	9	76	16	58	57	0	0	42	0.98
170774--170856	12	6.8	12	77	15	73	56	0	0	43	0.99
170774--170860	15	5.7	15	81	8	79	56	0	0	43	0.99
171013--171650	76	8.4	76	95	0	1150	34	22	19	23	1.96
171591--171961	185	2.0	185	98	0	724	37	15	15	31	1.89
172449--172501	22	2.4	22	93	0	97	41	13	11	33	1.80
172869--173301	54	8.0	54	94	0	722	24	22	15	37	1.93
174276--174473	110	1.8	110	86	2	290	30	22	17	29	1.96
175447--175666	114	1.9	114	93	0	377	30	20	15	33	1.93
180607--180692	36	2.4	36	86	3	102	61	5	13	18	1.52
182713--182753	16	2.7	15	85	14	57	70	0	2	26	0.99
183379--183423	21	2.1	22	83	4	56	44	0	6	48	1.29
183672--183718	24	1.9	25	91	4	78	68	0	2	29	1.02
183699--183739	16	2.6	16	88	11	59	65	0	0	34	0.93
184509--184552	21	2.0	22	86	8	63	0	4	34	61	1.16
185045--185124	3	27.3	3	80	9	94	58	0	0	41	0.98
185033--185128	15	7.0	14	75	20	96	57	0	0	42	0.98
185033--185128	21	4.7	21	79	13	103	57	0	0	42	0.98
185035--185107	9	7.7	9	79	14	60	58	0	0	41	0.98
185033--185121	12	7.8	12	75	20	52	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185539--185586	14	3.4	14	81	16	55	75	2	14	8	1.13
185539--185590	27	1.9	27	84	0	68	75	1	15	7	1.12
186557--186592	6	6.0	6	100	0	72	66	0	0	33	0.92
187857--187898	16	2.6	16	79	20	52	71	0	14	14	1.15
188077--188274	38	5.3	38	85	7	239	41	5	5	47	1.47
188063--188274	37	5.7	38	85	7	256	42	4	4	47	1.45
188022--188262	37	6.6	36	84	7	249	42	5	4	47	1.45
188238--188304	26	2.4	27	85	11	84	44	7	4	43	1.52
189368--189401	16	2.1	16	88	5	50	64	0	8	26	1.22
189410--189461	20	2.7	20	75	3	61	67	1	5	25	1.23
189514--189556	2	21.5	2	100	0	86	51	0	0	48	1.00
189968--190067	35	2.8	37	81	6	114	32	15	14	39	1.86
190528--191253	109	6.9	104	80	8	699	21	20	25	32	1.98
190528--191253	206	3.5	206	80	9	736	21	20	25	32	1.98
191830--191988	67	2.4	67	87	4	223	33	10	22	32	1.89
191863--192337	36	13.9	36	65	18	237	36	13	21	28	1.91
191930--192319	102	3.9	102	93	1	642	37	12	21	28	1.90
193845--193893	20	2.4	21	83	6	66	0	16	8	75	1.03
193868--193910	22	2.0	23	86	9	63	0	20	4	74	1.00
197068--197102	16	2.1	18	89	10	56	65	0	8	25	1.21
197214--197248	2	17.5	2	93	0	61	54	0	0	45	0.99
197662--197761	35	2.8	37	80	11	109	31	16	14	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197662--197761	37	2.8	36	82	11	107	31	16	14	39	1.87
201851--201885	15	2.3	15	95	0	61	40	0	2	57	1.14
205338--205383	2	23.0	2	100	0	92	50	0	0	50	1.00
205656--205685	13	2.3	13	94	0	51	36	26	10	26	1.88
206930--206962	13	2.5	13	95	0	57	39	0	0	60	0.97
206921--206962	16	2.7	15	82	10	57	42	0	0	57	0.99
207124--207363	90	2.7	90	92	3	387	34	21	19	25	1.96
207436--207478	12	3.6	12	100	0	86	34	18	6	39	1.78
207555--207901	55	7.0	54	70	19	258	29	28	12	29	1.93
207515--207804	98	3.0	98	88	2	422	30	27	12	29	1.93
207457--207933	239	2.0	239	97	0	909	29	28	12	29	1.93
207613--207954	141	2.4	141	87	3	483	30	28	11	29	1.92
207975--208051	39	2.0	39	81	0	91	35	12	20	31	1.91
208057--208250	21	10.4	21	63	24	94	36	11	25	26	1.91
208037--208124	36	2.4	36	85	7	124	30	13	28	27	1.94
208037--208210	93	1.9	93	90	0	276	34	13	24	27	1.93
208114--208313	36	5.4	36	86	4	247	37	13	22	27	1.91
208021--208237	93	2.4	90	75	15	239	35	12	24	27	1.92
208239--208355	39	3.0	40	89	2	173	31	17	20	30	1.95
208360--208645	73	3.8	76	79	7	305	41	11	17	29	1.85
208824--208908	34	2.5	34	88	0	125	35	14	20	30	1.92
209011--209142	32	4.1	32	90	0	192	33	21	13	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209485--209572	35	2.7	32	86	10	131	14	7	28	48	1.72
209740--209927	55	3.6	55	73	19	186	29	28	12	29	1.93
209780--209981	43	4.4	43	76	14	188	28	30	13	27	1.94
209735--209964	98	2.3	98	88	3	363	28	28	14	28	1.95
210064--210094	15	2.1	15	93	0	53	25	12	35	25	1.92
210081--210292	36	5.9	36	91	3	347	36	13	24	25	1.92
210081--210292	107	2.0	107	92	1	354	36	13	24	25	1.92
210264--210318	21	2.6	21	94	0	92	38	10	23	27	1.88
210228--210336	57	1.9	57	83	3	139	40	12	22	24	1.89
210302--210418	39	3.0	40	88	2	173	35	15	19	29	1.93
210423--210711	77	3.8	76	83	7	361	39	13	16	29	1.88
210889--211040	34	4.5	34	93	0	232	34	11	20	34	1.88
211151--211280	32	4.1	32	93	0	206	32	21	13	32	1.93
211624--211711	35	2.7	32	79	10	104	13	7	27	51	1.69
215203--215232	15	2.0	15	100	0	60	33	6	26	33	1.83
215422--215463	22	2.0	21	85	4	57	61	0	0	38	0.96
215413--215484	31	2.3	32	95	2	128	59	1	0	38	1.06
215473--215502	2	14.5	2	93	6	51	50	3	0	46	1.18
215551--215582	13	2.5	13	100	0	64	50	34	9	6	1.60
218036--218112	37	2.1	37	85	4	102	48	1	3	46	1.28
222243--222300	30	1.9	30	92	0	98	50	12	12	25	1.74
226377--226424	18	2.7	17	75	9	51	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
226483--226556	2	38.0	2	94	5	134	48	0	0	51	1.00
226651--226723	14	5.3	14	69	12	53	49	4	0	46	1.21
229836--230068	71	3.3	71	80	4	218	37	10	21	30	1.86
229871--230068	34	5.6	33	70	14	121	39	10	20	30	1.85
229869--230104	71	3.3	69	79	8	253	38	9	20	31	1.84
231011--231053	12	3.6	12	78	9	52	44	4	37	13	1.65

Tables:   1   2

The End!