genome.fa.s3516.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003516.1 Hibiscus syriacus cultivar Beakdansim tig00007434_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72770

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7179--7363	29	6.5	28	76	11	164	34	2	15	47	1.60
7196--7339	55	2.6	53	79	10	137	34	2	13	49	1.57
9411--9462	26	2.0	25	85	11	68	75	0	5	19	1.01
9415--9510	18	5.4	17	70	21	54	70	0	4	25	1.04
9453--9518	3	21.3	3	76	22	57	66	0	1	31	1.01
9452--9540	7	11.9	7	75	17	72	66	2	1	30	1.11
9525--9579	24	2.3	24	78	6	58	72	3	7	16	1.21
9454--9552	36	2.6	37	83	10	96	65	3	3	28	1.22
9467--9552	42	2.0	42	80	12	97	65	3	3	27	1.25
9611--9644	13	2.6	13	95	0	59	76	0	20	2	0.92
10159--10190	11	3.0	11	95	4	57	71	0	0	28	0.86
11962--12006	23	2.0	23	95	0	81	42	13	11	33	1.79
11963--12013	23	2.2	23	89	0	75	41	15	13	29	1.86
12006--12826	169	4.9	167	80	3	711	25	19	23	31	1.98
12010--12826	84	9.8	82	78	4	624	25	19	23	31	1.98
12135--12826	248	2.8	250	84	4	883	24	19	24	31	1.98
13904--14130	95	2.6	87	76	14	239	33	18	17	30	1.94
13962--14147	95	2.0	94	89	1	282	31	17	16	34	1.92
18029--18086	14	4.5	13	71	18	50	74	0	6	18	1.04
18020--18158	39	3.6	38	70	18	108	71	2	5	20	1.18
18029--18096	19	3.6	18	75	15	57	72	0	5	22	1.06
18029--18086	13	4.5	14	75	18	63	74	0	6	18	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18472--18502	2	15.5	2	93	0	53	51	3	0	45	1.17
20756--20799	22	2.0	22	86	0	61	38	0	9	52	1.33
25231--25266	18	2.0	18	88	0	54	13	22	22	41	1.89
26729--26776	19	2.5	20	86	3	62	31	14	6	47	1.69
27783--27941	65	2.5	65	83	5	189	30	15	20	32	1.94
28792--28855	20	3.6	20	65	30	63	18	23	26	31	1.98
28785--28853	32	2.2	32	100	0	138	18	21	28	30	1.97
28821--28942	45	2.8	45	80	13	137	24	20	25	29	1.99
28843--28929	23	3.8	23	72	17	83	26	21	24	27	1.99
28847--28942	21	4.3	23	73	15	69	27	19	23	29	1.99
32758--32797	21	1.9	21	85	10	55	40	7	0	52	1.30
34739--34845	45	2.3	46	87	4	146	33	18	19	28	1.96
41308--41380	36	2.0	36	100	0	146	67	10	13	8	1.42
41316--41386	21	3.7	21	69	21	73	69	8	15	7	1.36
41482--41524	20	2.2	20	86	0	59	30	13	20	34	1.92
43728--44247	4	130.0	4	84	0	295	35	49	15	0	1.45
43732--44247	20	25.6	20	87	3	435	35	49	15	0	1.45
45086--45155	27	2.6	27	95	0	122	35	11	18	34	1.87
47192--47247	25	2.2	25	90	0	85	30	0	10	58	1.32
51355--51445	30	3.0	29	84	9	112	42	1	9	46	1.44
53236--53280	18	2.4	19	82	14	58	53	0	2	44	1.13
53929--54002	28	2.7	27	87	4	94	32	39	0	28	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57312--57439	65	2.0	65	82	3	159	27	16	14	42	1.86
57897--57940	15	2.7	17	75	10	56	27	20	25	27	1.99
60312--60337	9	2.9	9	100	0	52	11	23	11	53	1.69
61242--61276	18	1.9	18	94	0	61	42	8	5	42	1.59
64406--64591	20	9.3	20	80	10	161	40	24	16	19	1.91
64381--64591	60	3.5	60	77	16	240	41	23	15	19	1.90
64703--64754	20	2.6	20	87	0	77	25	15	23	36	1.93
64780--64826	20	2.3	20	92	0	76	31	25	17	25	1.97
64798--64962	55	2.9	57	91	3	280	36	22	15	25	1.94
64962--64986	13	1.9	13	100	0	50	32	8	24	36	1.84
64996--65137	20	7.3	20	73	15	102	18	14	25	41	1.88
65131--65203	20	3.6	20	72	18	62	27	15	23	34	1.94
67876--68852	6	164.5	6	89	9	1519	33	16	0	49	1.46

Tables:   1

The End!