genome.fa.s3552.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003552.1 Hibiscus syriacus cultivar Beakdansim tig00007497_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  297196

Tables:   1   2   

This is table  1  of  2  ( 150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5541--5643	20	5.1	20	70	15	68	32	26	10	31	1.90
5565--5664	20	5.0	21	74	12	68	32	24	12	32	1.91
5669--5757	40	2.3	39	80	3	97	31	26	12	29	1.93
5708--5774	20	3.3	20	77	8	73	31	23	11	32	1.91
5684--5774	40	2.3	40	82	0	110	31	23	10	34	1.89
10066--10114	22	2.2	22	78	7	55	32	28	28	10	1.90
11689--11990	97	3.1	98	90	5	477	26	13	23	36	1.92
12007--12058	23	2.3	23	93	0	86	19	30	26	23	1.98
12019--12074	23	2.4	23	84	0	67	25	28	19	26	1.99
16751--16795	21	2.2	21	84	4	56	40	6	6	46	1.56
28795--28828	14	2.4	14	90	0	50	38	2	2	55	1.30
30554--30578	13	1.9	13	100	0	50	72	4	8	16	1.24
35232--35299	24	2.8	24	93	4	109	44	0	4	51	1.21
35330--35370	2	20.5	2	100	0	82	51	0	0	48	1.00
38120--38197	42	1.9	40	84	10	104	21	8	2	66	1.32
38315--38366	22	2.4	22	100	0	104	59	7	7	25	1.51
39308--39646	41	8.2	41	77	13	238	34	17	18	29	1.94
39488--39668	41	4.4	40	81	5	184	34	16	18	30	1.92
40171--40595	42	10.2	42	84	5	492	26	20	20	33	1.97
40214--40595	83	4.6	84	85	5	483	26	19	19	33	1.96
40214--40595	125	3.1	125	90	2	563	26	19	19	33	1.96
43443--43516	21	3.5	21	90	0	112	40	21	37	0	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43913--44223	43	7.2	43	75	10	136	32	24	16	26	1.96
43913--44221	86	3.6	85	78	9	306	33	24	16	26	1.96
44155--44294	70	2.0	70	97	0	262	27	25	15	32	1.95
51150--51223	30	2.5	30	77	12	82	37	5	6	50	1.52
57336--57379	23	2.0	22	86	4	61	43	9	0	47	1.35
59162--59195	16	2.1	16	94	0	59	32	8	26	32	1.87
65864--65901	5	7.6	5	100	0	76	18	0	60	21	1.36
69423--69467	21	2.1	21	100	0	90	13	15	13	57	1.65
70068--70098	10	3.1	10	95	0	53	32	32	0	35	1.58
71729--71858	51	2.5	51	83	2	145	20	29	34	15	1.93
73425--73475	21	2.4	21	100	0	102	21	23	31	23	1.98
73615--73668	21	2.6	21	96	0	99	20	12	46	20	1.83
73896--73935	21	1.9	21	89	0	62	50	10	10	30	1.69
75610--75640	14	2.1	15	94	5	55	0	32	0	67	0.91
79519--79925	198	2.1	195	86	3	557	25	17	21	34	1.95
80936--80973	2	19.5	2	94	5	69	50	0	0	50	1.00
84980--85139	81	2.0	81	92	0	266	25	16	21	36	1.93
85685--85736	20	2.8	18	75	11	50	59	1	0	38	1.08
89213--89299	10	7.7	10	72	22	66	59	19	10	10	1.58
89243--89292	13	4.1	13	75	15	52	60	16	10	14	1.59
89215--89300	23	3.7	23	87	1	118	60	18	10	10	1.57
89561--89598	14	2.7	14	100	0	76	57	15	13	13	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96828--96908	3	27.0	3	87	0	117	35	2	1	60	1.18
98230--98276	20	2.3	21	75	10	53	25	4	8	61	1.43
98991--99068	26	2.9	27	75	9	79	35	2	1	60	1.19
102346--102377	15	2.1	15	94	0	55	25	18	9	46	1.79
109701--109754	10	5.2	10	86	6	63	79	0	20	0	0.73
109698--109753	12	4.8	12	84	6	71	80	0	19	0	0.71
110897--111186	83	3.5	83	90	0	436	27	12	21	38	1.89
111915--112457	113	4.8	112	91	2	853	39	15	18	26	1.90
112399--112494	36	2.5	38	88	6	133	52	8	19	19	1.71
112749--112811	3	21.0	3	83	0	81	36	3	1	58	1.23
112745--112867	14	10.3	11	78	16	74	41	1	1	55	1.19
112813--112858	2	23.0	2	95	0	83	47	0	2	50	1.13
119183--119250	27	2.6	27	88	9	97	32	7	16	44	1.75
122939--123006	27	2.6	27	90	4	104	30	10	17	41	1.83
123729--123930	100	2.0	100	96	0	368	32	9	29	28	1.88
133686--133732	25	2.0	25	83	8	62	25	23	8	42	1.82
135352--135383	16	1.9	17	93	6	57	37	6	18	37	1.76
138673--138704	15	2.1	15	100	0	64	62	18	0	18	1.33
158445--158500	24	2.3	25	75	9	62	19	16	12	51	1.75
158685--158747	23	2.7	23	87	0	99	36	9	20	33	1.85
159257--159375	60	2.0	60	81	3	141	32	19	5	42	1.75
159542--159689	60	2.5	60	84	5	174	42	4	18	33	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184032--184338	93	3.3	92	85	3	350	29	20	24	25	1.99
187847--187879	2	17.5	2	87	12	52	54	0	0	45	0.99
187847--187895	12	3.7	13	80	19	57	59	0	0	40	0.98
188577--188711	73	1.9	73	89	4	211	39	21	10	28	1.86
189712--189779	20	3.5	20	81	4	75	38	23	16	22	1.93
190524--190557	12	2.8	12	90	0	50	55	29	0	14	1.40
193342--193397	20	2.8	20	88	0	85	19	21	21	37	1.94
193488--193537	25	2.0	25	96	0	91	26	8	22	44	1.80
193923--193959	18	2.1	18	89	0	56	32	5	10	51	1.60
193915--193967	24	2.2	24	86	0	70	35	3	13	47	1.61
194271--194346	40	1.9	40	94	0	134	50	22	11	15	1.77
194534--194596	20	3.2	20	88	0	99	41	23	19	15	1.90
194604--194648	20	2.2	20	88	0	72	20	22	22	35	1.96
194732--194830	52	2.0	49	86	9	139	51	15	1	32	1.50
196233--196328	21	4.6	21	76	8	97	21	18	36	22	1.95
196233--196328	42	2.3	42	82	7	122	21	18	36	22	1.95
197843--197914	30	2.4	30	81	2	83	31	27	19	20	1.97
197900--197972	31	2.4	31	97	0	137	31	27	20	20	1.97
197900--197995	31	3.1	31	87	3	86	35	25	18	20	1.95
198947--199001	20	2.8	20	100	0	110	25	20	25	29	1.99
199012--199152	64	2.2	63	80	5	158	26	23	17	33	1.96
201664--201715	22	2.4	22	90	0	77	26	13	38	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
201843--201907	20	3.2	20	80	8	78	16	13	23	46	1.83
202100--202151	27	1.9	27	84	0	68	30	7	9	51	1.62
204117--204169	22	2.4	22	81	12	56	67	11	1	18	1.30
207220--207307	32	2.8	32	81	6	97	38	14	17	29	1.89
207426--207471	2	23.5	2	95	4	85	50	0	0	50	1.00
213566--213649	41	2.0	41	84	8	109	26	9	27	36	1.87
213782--213925	34	4.3	34	77	8	152	20	6	30	43	1.76
213761--213898	66	2.1	67	86	4	190	20	6	28	44	1.76
214217--214322	30	3.5	30	92	0	131	32	16	27	23	1.96
217170--217208	19	2.1	19	95	0	69	48	2	5	43	1.38
218950--218994	2	23.0	2	95	4	83	48	0	0	51	1.00
221537--221562	3	8.7	3	100	0	52	34	0	0	65	0.93
223004--223030	2	13.5	2	100	0	54	48	0	0	51	1.00
223131--223201	2	35.5	2	94	0	124	50	2	0	46	1.16
224797--224858	32	1.9	32	90	6	99	17	16	9	56	1.66
228082--228135	2	27.0	2	96	0	99	48	0	1	50	1.11
231063--231869	403	2.0	403	99	0	1578	37	16	18	26	1.92
232653--232730	33	2.4	33	84	4	95	35	15	19	29	1.92
232672--232744	33	2.2	32	87	2	101	34	17	20	27	1.95
233137--233203	34	2.0	34	88	5	100	34	19	8	37	1.83
233401--233449	15	3.0	15	75	18	53	28	16	12	42	1.84
233907--234256	126	2.8	125	93	1	587	31	24	18	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
234341--234663	40	7.6	40	68	16	195	23	31	18	26	1.98
234384--234694	43	7.2	42	67	15	161	24	29	18	27	1.98
234233--234711	129	3.7	129	91	2	727	24	28	18	27	1.98
237331--237371	2	20.5	2	100	0	82	48	0	0	51	1.00
239179--239237	23	2.6	23	80	0	73	13	15	10	61	1.57
241025--241062	3	12.7	3	94	0	67	36	63	0	0	0.95
244160--244197	19	2.0	20	94	5	69	28	15	28	26	1.96
244165--244323	63	2.5	62	85	4	203	32	19	21	26	1.97
244779--245081	149	2.0	149	97	0	570	29	15	19	35	1.93
245060--245105	23	2.0	23	86	0	65	23	23	23	28	2.00

Tables:   1   2