Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003552.1 Hibiscus syriacus cultivar Beakdansim tig00007497_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  297196

Tables:   1   2   

This is table  2  of  2  ( 150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
251202--251239
19
2.0
20
94
5
69
28
15
28
26
1.96
251207--251365
63
2.5
62
83
4
194
33
19
21
25
1.97
251810--252115
151
2.0
150
97
1
578
28
15
19
35
1.93
252093--252138
23
2.0
23
91
0
74
21
23
26
28
1.99
265691--265733
18
2.3
19
88
8
61
37
9
25
27
1.87
265689--265734
20
2.3
21
75
21
53
41
8
23
26
1.83
265760--265796
15
2.5
15
95
0
65
40
8
10
40
1.70
266147--266218
31
2.3
31
82
4
90
34
9
29
26
1.88
268500--268539
18
2.1
18
86
9
53
65
0
5
30
1.14
269469--269661
29
6.6
29
82
3
217
34
3
21
39
1.71
274409--274472
28
2.3
28
100
0
128
32
20
21
25
1.97
276880--276964
19
4.5
19
86
5
118
11
29
31
27
1.92
276882--276932
10
5.3
10
72
9
52
11
25
31
31
1.92
276875--276964
38
2.4
38
88
0
135
12
30
31
26
1.92
276886--276956
9
7.6
9
69
9
52
11
25
33
29
1.91
277000--277119
29
4.2
29
90
4
190
34
4
21
40
1.73
276987--277119
57
2.3
58
92
5
225
33
3
22
40
1.72
278146--278199
26
2.1
26
82
0
63
25
7
16
50
1.71
279168--279233
26
2.6
26
97
2
125
48
3
18
30
1.63
284304--284520
39
5.7
39
80
13
188
46
3
4
45
1.41
284281--284520
41
6.2
38
81
11
249
46
3
5
45
1.41
284490--284547
30
2.0
29
90
10
91
44
1
1
51
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
284495--284571
29
2.6
29
79
4
73
50
2
3
42
1.34
284612--284658
3
14.7
3
86
8
58
27
2
0
70
0.99
284609--284659
17
3.1
17
88
2
77
27
1
0
70
0.98
286013--286042
11
2.7
11
89
0
51
16
10
3
70
1.29
286977--287006
11
2.7
11
89
0
51
16
10
3
70
1.29
285582--287509
967
2.0
964
92
3
3196
25
14
13
46
1.81
288379--288430
18
2.8
18
83
13
70
46
0
3
50
1.20
288388--288430
18
2.4
18
92
0
77
48
0
4
46
1.22

Tables:   1   2

The End!