genome.fa.s3557.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003557.1 Hibiscus syriacus cultivar Beakdansim tig00007507_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  193288

Tables:   1   

This is table  1  of  1  ( 114 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4484--4514	16	1.9	16	93	0	53	58	25	0	16	1.38
4776--4809	14	2.4	15	85	14	54	50	8	11	29	1.69
18375--18454	23	3.6	23	72	13	85	27	23	23	25	2.00
24265--24414	65	2.3	65	84	2	194	30	17	23	29	1.97
25368--25544	30	5.5	30	68	19	124	29	16	12	40	1.86
25333--25578	66	3.7	66	91	0	384	28	17	13	39	1.88
25314--25512	36	5.9	36	69	17	129	27	18	13	40	1.88
25470--25509	21	2.0	19	85	9	53	25	20	15	40	1.90
25333--25611	132	2.1	131	86	2	380	29	18	13	38	1.89
25522--25828	101	3.0	98	83	8	337	32	18	12	37	1.88
32765--32824	6	10.5	6	82	10	63	20	10	66	3	1.35
32765--32823	15	3.9	15	79	0	64	18	10	67	3	1.33
32768--32824	21	2.7	21	83	0	69	19	10	66	3	1.36
33370--33444	30	2.5	29	85	6	105	21	8	26	44	1.80
34014--34064	16	3.0	16	78	13	57	31	25	5	37	1.80
37173--37203	15	2.1	15	93	0	53	45	0	0	54	0.99
37359--37414	20	2.8	20	97	0	103	21	21	10	46	1.81
43997--44042	4	11.5	4	100	0	92	0	23	0	76	0.79
45713--45795	12	6.9	12	79	5	78	53	18	13	15	1.74
45713--45831	24	5.0	24	74	8	89	51	16	13	18	1.77
45717--45831	48	2.4	48	82	7	137	51	16	13	19	1.76
48890--48968	12	6.6	12	78	5	70	53	17	12	16	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48899--48968	24	2.9	24	86	0	104	50	18	14	17	1.79
48899--49005	48	2.2	48	81	6	119	48	16	14	20	1.81
48899--49005	24	4.5	24	72	11	94	48	16	14	20	1.81
51937--51995	2	29.5	2	96	0	109	49	0	0	50	1.00
52162--52264	24	4.3	24	67	14	70	50	15	12	21	1.77
55195--55227	2	16.5	2	100	0	66	51	0	0	48	1.00
55389--55450	24	2.6	24	82	10	81	53	17	11	17	1.72
55390--55497	24	4.5	24	68	15	80	50	15	12	21	1.78
57728--57760	17	2.0	17	88	5	50	33	9	21	36	1.85
58611--58672	24	2.6	24	82	10	81	53	17	11	17	1.72
58612--58719	24	4.5	24	68	15	80	50	15	12	21	1.78
61825--61884	24	2.6	23	81	2	66	55	16	8	20	1.67
61828--61932	24	4.4	24	66	13	56	49	14	13	22	1.78
64318--64364	10	5.5	8	82	14	51	23	27	34	14	1.94
64360--64409	18	2.8	18	87	0	73	14	16	52	18	1.76
65155--65409	124	2.1	124	90	3	397	37	7	10	44	1.67
69049--69100	20	2.7	19	77	19	54	59	11	0	28	1.32
70596--70659	29	2.2	29	97	0	119	32	9	12	45	1.74
70582--70903	137	2.3	139	86	4	452	35	9	11	43	1.74
70733--70791	29	2.0	29	87	6	84	30	6	11	50	1.65
75624--75662	17	2.2	18	95	4	71	71	12	0	15	1.14
75865--75891	3	9.0	3	100	0	54	33	33	0	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77420--77466	2	23.0	2	95	4	85	48	0	2	48	1.13
78010--78045	11	3.3	11	92	0	63	36	8	19	36	1.82
78397--78457	20	3.1	19	80	13	70	55	8	18	18	1.66
78199--78671	181	2.6	182	89	1	700	42	13	17	26	1.87
78592--78638	20	2.4	19	82	10	67	53	10	17	19	1.72
78601--78643	20	2.3	19	88	11	63	51	11	16	20	1.75
80634--81023	182	2.1	184	94	1	696	34	14	16	34	1.90
83488--83552	25	2.6	25	97	0	121	40	10	12	36	1.78
83896--83968	23	3.2	23	90	0	110	35	5	20	38	1.76
84385--84457	23	3.2	23	88	0	110	34	5	20	39	1.76
84868--84940	23	3.2	23	88	0	110	34	5	20	39	1.76
84868--84965	46	2.1	45	81	7	108	33	7	17	41	1.77
85354--85426	23	3.2	23	88	0	110	34	5	20	39	1.76
85354--85451	46	2.1	45	81	7	108	33	7	17	41	1.77
85843--85915	23	3.2	23	88	0	110	34	5	20	39	1.76
86330--86402	23	3.2	23	88	0	110	34	5	20	39	1.76
83552--87526	974	4.1	976	98	1	7618	40	7	11	40	1.70
83552--87526	486	8.2	489	98	0	7626	40	7	11	40	1.70
86816--86888	23	3.2	23	88	0	110	34	5	20	39	1.76
87303--87375	23	3.2	23	88	0	110	34	5	20	39	1.76
87303--87400	46	2.1	45	81	7	108	33	7	17	41	1.77
89173--89205	2	16.5	2	100	0	66	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90291--90338	21	2.3	21	92	0	87	43	2	4	50	1.33
94721--94802	29	2.8	29	94	1	137	32	14	9	42	1.79
99430--99511	29	2.8	29	94	1	137	32	14	9	42	1.79
104135--104216	29	2.8	29	94	1	137	32	14	9	42	1.79
111495--111559	15	4.3	15	71	21	55	35	0	0	64	0.94
117952--117994	13	3.3	13	83	0	59	65	0	0	34	0.93
117961--118009	23	2.1	23	88	3	71	65	0	0	34	0.93
118575--118615	21	2.0	21	95	0	73	65	0	4	29	1.13
119164--119268	37	2.8	37	88	0	156	31	14	14	40	1.86
119998--120389	106	3.8	106	78	8	419	24	18	22	34	1.96
120418--120958	106	5.1	106	93	0	920	23	17	25	34	1.96
120771--121127	169	2.1	169	95	1	635	23	17	24	34	1.96
120877--121021	63	2.3	63	95	0	254	24	16	26	33	1.96
120666--121182	275	1.9	275	92	0	874	23	17	24	34	1.96
120940--121969	106	9.8	106	88	2	1484	23	17	24	34	1.96
121888--122032	63	2.3	63	93	0	245	24	16	25	33	1.96
121782--122138	169	2.1	169	94	0	624	24	17	25	33	1.96
121677--122244	275	2.1	275	94	0	994	23	17	25	33	1.96
121951--122472	106	4.9	106	91	0	830	23	16	25	34	1.95
121570--122350	381	2.0	381	92	0	1285	23	16	25	34	1.96
121464--122455	487	2.0	486	92	0	1644	23	17	25	34	1.96
123298--123374	22	3.5	22	89	0	118	22	14	27	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123989--124038	12	4.2	12	76	16	50	0	16	4	80	0.87
123976--124038	13	5.1	13	77	11	53	1	14	4	79	0.97
123966--124047	23	3.6	22	73	14	69	1	18	6	74	1.09
127352--127426	40	1.9	38	84	10	98	68	1	14	16	1.29
127425--127483	22	2.6	23	78	13	59	77	3	3	15	1.02
127503--127561	2	30.5	2	89	6	95	54	0	0	45	0.99
127513--127569	14	4.1	14	76	17	55	56	0	0	43	0.99
128006--128064	2	29.5	2	92	0	100	49	1	1	47	1.21
128073--128116	12	4.2	11	86	13	58	68	4	6	20	1.31
128128--128218	19	4.8	19	70	16	64	67	1	5	26	1.20
128192--128230	12	3.2	12	85	3	51	66	0	5	28	1.12
128135--128230	24	4.0	24	69	24	76	65	1	6	27	1.23
128769--128873	37	2.8	37	88	0	156	32	14	13	40	1.84
129480--129525	25	1.9	23	83	16	58	54	10	0	34	1.36
131311--131335	8	3.1	8	100	0	50	12	28	12	48	1.76
133220--133309	2	49.0	2	69	16	61	51	0	0	48	1.00
133220--133309	42	2.1	42	93	4	155	51	0	0	48	1.00
137869--137927	29	2.0	29	100	0	118	33	16	23	25	1.96
139716--139757	22	2.0	22	85	4	59	45	4	9	40	1.58
154997--155071	21	3.4	21	66	28	57	41	2	36	20	1.66
154984--155074	45	2.0	45	91	0	146	40	4	35	19	1.72
157611--157683	35	2.1	35	92	0	119	39	23	15	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158577--158811	112	2.1	113	95	2	429	45	3	4	45	1.40
165289--165363	36	2.3	31	74	22	80	24	12	38	25	1.89
180631--180849	111	2.0	111	90	3	343	32	16	18	32	1.94
190790--190845	25	2.2	26	84	9	71	28	3	7	60	1.40

Tables:   1

The End!