genome.fa.s3559.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003559.1 Hibiscus syriacus cultivar Beakdansim tig00007512_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60357

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1219--1266	24	2.0	25	88	8	73	41	2	4	52	1.32
5591--5633	20	2.2	20	100	0	86	44	13	18	23	1.86
7820--7870	22	2.5	20	79	17	59	21	13	5	58	1.56
16320--16408	42	2.2	40	84	9	117	30	17	10	41	1.83
16321--16392	20	3.5	20	70	12	65	31	18	11	38	1.85
16348--16408	20	3.0	21	80	9	72	27	18	9	44	1.81
16914--16964	18	2.7	18	74	17	50	45	3	3	47	1.40
26723--26815	21	4.5	21	78	4	100	39	18	24	17	1.91
26723--26815	41	2.3	41	100	0	186	39	18	24	17	1.91
26742--26876	41	3.3	41	84	4	148	38	20	20	20	1.94
26804--26897	20	4.7	20	80	2	89	34	24	17	24	1.96
27417--27497	19	4.5	19	73	16	73	46	24	17	11	1.80
27493--27677	19	10.1	19	75	14	165	12	21	21	44	1.85
27493--27677	33	5.1	38	77	12	165	12	21	21	44	1.85
27620--27677	20	2.9	20	80	10	64	15	24	17	43	1.87
29678--29800	42	2.9	42	79	2	113	22	35	17	23	1.95
29734--29800	21	3.2	21	66	6	55	23	35	20	19	1.95
31160--31195	14	2.6	14	95	0	63	30	0	25	44	1.54
31375--31525	19	8.7	19	64	21	80	15	22	20	41	1.89
31379--31505	33	3.9	32	87	8	193	14	22	19	42	1.88
31372--31504	66	2.0	66	97	0	248	16	22	19	41	1.90
33794--33818	12	2.1	12	100	0	50	0	28	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33993--34046	24	2.2	24	90	0	81	38	20	16	24	1.92
34956--35013	20	2.9	20	97	0	107	37	24	22	15	1.93
35032--35152	19	6.6	19	88	9	189	14	22	18	45	1.84
35036--35135	33	2.8	35	91	8	159	15	20	17	48	1.82
35032--35152	52	2.2	54	89	7	183	14	22	18	45	1.84
37130--37196	19	3.5	19	83	4	89	37	23	23	14	1.93
37185--37242	14	3.9	14	79	16	71	48	25	17	8	1.75
37169--37247	32	2.4	33	95	2	142	46	24	18	10	1.80
37254--37349	14	5.7	17	70	21	69	13	18	21	45	1.84
37257--37349	32	2.8	33	91	3	152	13	18	21	46	1.84
37334--37387	20	2.8	19	86	5	72	16	24	24	35	1.95
37322--37387	19	3.4	19	81	4	78	15	22	24	37	1.92
37860--37904	18	2.5	18	85	0	63	11	15	46	26	1.79
39223--39276	20	2.8	20	80	2	65	48	22	16	12	1.80
39510--39553	22	2.0	22	95	0	79	18	15	45	20	1.85
39721--39816	20	4.7	21	73	12	83	26	15	22	35	1.94
39721--39818	41	2.4	41	84	0	133	25	15	22	36	1.93
39804--39896	20	4.5	21	75	4	91	17	23	18	40	1.90
39743--39877	41	3.3	41	83	4	139	20	20	21	38	1.94
39804--39896	41	2.3	41	96	0	177	17	23	18	40	1.90
51831--51972	22	6.5	22	93	0	113	27	19	25	27	1.99
51847--51967	22	5.5	22	96	0	215	27	20	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52440--52503	2	32.0	2	100	0	128	50	0	0	50	1.00
52685--52753	35	2.0	35	85	5	95	24	21	14	39	1.91
59709--59783	15	5.0	15	81	0	87	36	5	20	38	1.75
59923--59991	24	2.9	24	82	8	79	26	18	21	33	1.97

Tables:   1

The End!