genome.fa.s3590.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003590.1 Hibiscus syriacus cultivar Beakdansim tig00007571_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87485

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
685--754	33	2.2	32	82	10	81	47	2	0	50	1.16
7905--7952	2	24.0	2	100	0	96	50	0	0	50	1.00
12683--12876	75	2.6	75	83	4	232	27	6	15	50	1.68
17950--17980	15	2.1	15	93	0	53	45	0	0	54	0.99
21837--21862	2	13.0	2	100	0	52	50	0	0	50	1.00
24876--24942	28	2.4	28	95	2	118	28	7	28	35	1.84
25729--25768	20	1.9	20	85	10	53	25	22	7	45	1.78
27959--28003	21	2.1	21	87	0	63	15	24	28	31	1.96
31296--31368	30	2.4	30	95	0	128	30	24	20	24	1.99
31354--31481	31	4.1	31	78	6	141	34	21	17	26	1.96
31351--31479	63	2.1	61	85	7	179	33	20	19	27	1.96
32814--32858	21	2.1	21	87	0	63	15	24	28	31	1.96
44874--44973	21	4.8	21	91	7	152	67	0	33	0	0.91
44875--44975	10	10.1	9	70	21	60	68	0	31	0	0.90
44874--44973	41	2.4	41	90	8	150	67	0	33	0	0.91
48282--48420	19	7.7	19	67	28	81	38	2	5	53	1.37
48267--48454	53	3.5	53	89	7	274	38	2	6	53	1.39
48285--48457	34	5.0	34	71	15	131	39	2	5	52	1.38
51834--51891	20	2.6	22	86	10	75	31	18	22	27	1.97
54048--54095	17	2.8	17	84	6	53	50	4	2	43	1.33
54430--54499	4	16.8	4	73	24	56	0	30	0	70	0.88
54435--54496	10	6.1	10	75	21	58	0	30	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54420--54499	20	4.0	19	79	12	81	0	30	0	70	0.88
59249--59280	16	2.0	16	93	0	55	40	0	21	37	1.54
59505--59549	20	2.2	20	88	0	63	26	11	20	42	1.85
67659--67717	29	1.9	32	86	10	88	35	22	13	28	1.92
70324--70349	13	2.0	13	100	0	52	38	0	15	46	1.46
72467--72509	18	2.4	17	81	11	50	41	2	0	55	1.12
73049--73131	29	2.7	31	92	3	134	21	31	34	12	1.90
73668--73711	21	2.1	21	91	0	70	29	0	15	54	1.42
73688--73750	28	2.2	30	94	5	112	30	0	12	57	1.36
74548--74623	15	5.3	15	73	13	70	48	6	1	43	1.37
77598--77645	25	1.9	25	87	8	71	39	2	12	45	1.54
77628--77849	49	4.7	46	81	12	231	43	0	10	45	1.38
77606--77869	93	2.8	94	86	6	333	43	0	10	45	1.42
78097--78144	18	2.8	17	79	17	55	39	0	12	47	1.41
77990--78415	26	17.3	24	75	14	227	43	3	8	44	1.50
78083--78391	98	3.2	97	87	6	396	43	2	9	44	1.50
77968--78402	86	5.2	86	79	12	381	43	2	8	45	1.50
78486--78606	59	2.1	56	86	4	161	39	4	9	47	1.55
78498--78619	59	2.1	59	84	3	156	42	4	8	45	1.53
83740--83785	23	2.0	24	86	4	67	47	0	0	52	1.00
85288--85333	12	3.5	13	77	19	51	41	2	0	56	1.11
85391--85422	12	2.4	14	90	10	50	31	0	0	68	0.90

Tables:   1

The End!