genome.fa.s3628.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003628.1 Hibiscus syriacus cultivar Beakdansim tig00007685_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90574

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10802--10884	37	2.3	35	87	8	114	42	15	4	37	1.69
15382--15500	36	3.3	35	83	4	148	42	19	3	34	1.68
19373--19425	27	2.0	26	82	10	63	45	0	3	50	1.19
19430--19545	37	3.2	36	68	16	96	35	6	1	56	1.34
19500--19545	19	2.5	20	82	13	62	34	6	0	58	1.24
19500--19546	18	2.6	18	86	10	60	34	6	0	59	1.23
19445--19551	34	3.1	34	70	16	101	35	4	1	57	1.30
19525--19561	13	2.7	14	84	15	51	37	2	0	59	1.12
24854--24978	31	4.0	31	92	2	198	20	19	22	37	1.94
29542--29666	31	4.0	31	90	2	189	21	18	22	37	1.94
30957--31019	12	5.1	12	71	25	51	49	1	0	49	1.10
30937--31100	28	6.1	27	69	19	94	48	2	3	45	1.31
30957--31019	16	3.8	16	76	17	65	49	1	0	49	1.10
31041--31101	31	2.0	31	90	6	97	50	3	4	40	1.40
31082--31245	21	7.6	21	65	21	70	48	4	6	40	1.49
31016--31223	88	2.4	88	81	8	228	48	3	5	42	1.44
31163--31204	22	2.0	21	90	9	68	50	9	4	35	1.56
31255--31326	18	4.2	18	69	16	62	44	5	5	44	1.50
31409--31553	2	71.0	2	72	21	106	48	3	4	43	1.38
31567--31594	13	2.2	13	100	0	56	39	7	7	46	1.59
31583--31617	18	1.9	18	94	0	61	37	8	14	40	1.76
31591--31702	42	2.9	40	78	16	128	43	8	7	40	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31617--31665	18	2.7	19	78	9	57	42	8	6	42	1.59
31731--31769	13	3.0	13	88	0	60	41	2	7	48	1.45
31643--31769	35	3.7	33	75	15	107	42	6	7	43	1.59
31758--31831	20	3.5	20	72	16	67	52	2	6	37	1.42
31788--31855	29	2.3	29	80	12	77	52	0	7	39	1.29
31848--31904	14	4.2	14	75	4	55	49	26	1	22	1.60
31875--31912	20	1.9	20	94	0	67	44	36	0	18	1.50
31875--31914	7	5.9	7	82	5	55	42	40	0	17	1.49
31909--31968	22	2.6	22	84	10	68	50	8	0	41	1.33
32145--32213	22	3.2	22	76	15	90	44	7	2	44	1.46
32127--32185	31	1.9	31	86	6	84	47	5	3	44	1.42
32308--33223	215	4.3	215	91	4	1445	28	11	9	50	1.69
36944--36989	24	1.9	24	95	0	83	43	26	13	17	1.85
39459--39491	16	2.1	16	100	0	66	24	12	24	39	1.89
43366--43402	20	1.9	19	89	10	58	45	10	24	18	1.81
51822--51914	49	2.0	49	83	8	122	63	4	6	25	1.37
54086--54126	18	2.3	18	91	4	66	63	2	4	29	1.28
54166--54208	10	4.1	11	82	17	56	44	0	27	27	1.55
56052--56097	20	2.3	19	89	10	74	56	10	15	17	1.67
55839--56311	181	2.6	182	87	1	644	43	13	15	27	1.84
56232--56278	20	2.4	19	82	10	67	53	10	17	19	1.72
56241--56283	20	2.3	19	88	11	63	51	11	16	20	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56423--56475	24	2.2	24	86	6	72	54	13	5	26	1.60
58387--58415	15	1.9	15	100	0	58	20	6	55	17	1.65
58500--58564	21	3.1	21	90	0	94	41	9	30	18	1.82
58598--58663	33	2.0	33	90	0	105	28	0	48	22	1.51
58846--58899	15	3.2	17	70	21	51	53	0	42	3	1.18
60876--61751	200	4.4	200	95	1	1555	35	14	18	31	1.91
63209--63266	6	9.7	6	78	0	53	41	6	32	18	1.78
63209--63302	18	5.2	18	80	0	89	38	9	32	19	1.84
63209--63302	12	7.8	12	81	0	80	38	9	32	19	1.84
63235--63303	3	23.0	3	87	0	66	34	10	33	21	1.87
63222--63303	9	9.1	9	83	0	74	36	9	32	20	1.86
63222--63302	6	13.5	6	85	0	72	37	9	33	19	1.85
64513--65084	183	3.1	183	94	2	981	36	14	16	32	1.89
67918--67990	23	3.2	23	92	0	119	34	5	21	38	1.77
68401--68473	23	3.2	23	92	0	119	34	5	21	38	1.77
68887--68959	23	3.2	23	92	0	119	34	5	21	38	1.77
69373--69445	23	3.2	23	90	0	119	34	4	21	39	1.73
67581--70820	483	6.7	490	96	1	5938	41	7	11	39	1.69
69863--69935	23	3.2	23	92	0	119	34	5	21	38	1.77
70345--70409	23	2.8	23	92	0	103	38	3	21	36	1.69
67581--70820	973	3.3	970	96	1	5959	41	7	11	39	1.69
70346--70418	23	3.2	22	84	7	92	35	4	20	39	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76056--76391	126	2.8	117	82	7	392	42	10	9	36	1.73
77419--77459	13	3.1	14	86	10	59	0	24	29	46	1.53
77983--78042	17	3.4	17	69	24	52	18	25	8	48	1.75
77930--78420	123	4.0	120	85	6	593	26	19	15	39	1.90
78205--78629	114	3.7	113	86	5	543	26	20	14	38	1.91
78570--78670	40	2.5	40	98	0	193	18	25	9	45	1.80
78456--78783	153	2.1	154	96	0	595	25	21	13	39	1.90
78610--78896	113	2.5	113	98	0	556	26	21	14	37	1.92
78836--78936	40	2.5	40	95	0	184	19	23	9	46	1.80
78723--79049	153	2.1	153	98	0	636	25	21	14	38	1.91
78343--79162	266	3.1	266	96	0	1480	25	21	14	38	1.91
78876--79176	113	2.7	113	95	1	541	26	20	14	37	1.92
79193--79373	76	2.4	76	89	0	274	34	20	19	24	1.96
80049--80103	22	2.5	22	87	0	83	40	16	9	34	1.80
88963--89292	113	2.8	113	83	8	362	42	10	9	36	1.72
90309--90334	11	2.4	11	100	0	52	0	26	26	46	1.53

Tables:   1

The End!