genome.fa.s3632.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003632.1 Hibiscus syriacus cultivar Beakdansim tig00007690_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61197

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
549--602	18	3.0	18	97	0	99	50	20	18	11	1.77
3954--4007	25	2.2	25	90	6	83	7	37	29	25	1.83
5132--5161	2	15.0	2	92	0	51	53	0	0	46	1.00
11956--12015	24	2.5	25	83	8	70	58	0	3	38	1.15
12048--12074	3	9.0	3	100	0	54	33	0	0	66	0.92
13545--13632	21	4.2	21	72	18	76	27	0	29	43	1.55
13537--13609	35	2.1	35	85	10	96	28	0	27	43	1.55
13545--13632	42	2.1	42	83	8	108	27	0	29	43	1.55
13908--13944	17	2.2	17	90	0	56	24	13	29	32	1.93
13929--13993	11	5.6	11	72	22	53	26	26	23	24	2.00
13923--13994	23	3.1	23	83	2	99	25	26	23	25	2.00
14726--14837	23	4.8	23	80	7	102	17	26	21	33	1.96
20970--21047	23	3.4	22	77	8	75	35	21	21	20	1.96
33202--33234	13	2.5	13	90	0	57	6	36	0	57	1.23
45770--45845	3	24.0	3	84	7	89	31	0	0	68	0.90
45765--45844	35	2.2	38	86	8	121	31	0	0	68	0.90
45761--45845	32	2.7	31	87	7	118	30	0	0	69	0.89
47199--47257	3	20.3	3	75	13	52	27	3	1	67	1.16
47188--47249	29	2.2	28	81	16	76	29	4	3	62	1.31
47199--47257	29	2.1	28	87	9	86	27	3	1	67	1.16
53153--53211	19	3.1	19	85	11	68	81	0	15	3	0.82
53165--53212	14	3.4	14	97	2	87	85	0	14	0	0.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53164--53211	9	4.9	10	85	12	64	85	0	14	0	0.60
55377--55717	115	3.0	114	89	1	522	34	14	18	31	1.91
58230--58285	23	2.5	23	85	2	78	35	14	14	35	1.86
58693--59413	113	6.4	113	88	1	977	37	14	19	28	1.90
58694--59413	222	3.2	225	87	2	986	37	14	19	29	1.90
59319--59487	72	2.4	72	89	5	254	33	15	18	32	1.92
59206--59553	184	1.9	184	86	5	499	34	14	20	30	1.93
59591--60123	113	4.7	113	77	11	464	37	13	20	28	1.91
58871--59891	532	1.9	521	84	5	1356	36	13	20	29	1.91
59924--60125	109	1.8	111	87	5	302	36	16	20	26	1.94
60348--60411	3	20.3	3	90	9	101	31	0	0	68	0.90

Tables:   1

The End!