genome.fa.s3642.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003642.1 Hibiscus syriacus cultivar Beakdansim tig00007735_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111532

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3926--3982	22	2.6	21	72	8	60	24	0	10	64	1.24
33356--33395	15	2.7	15	100	0	80	45	5	22	27	1.73
35127--35158	10	3.2	10	90	0	55	37	9	21	31	1.85
35128--35171	20	2.2	20	84	8	54	34	13	22	29	1.93
36504--36552	23	2.1	23	92	0	80	36	2	10	51	1.48
36560--36589	15	2.0	15	100	0	60	40	0	0	60	0.97
37259--37307	22	2.3	22	78	3	55	55	10	10	24	1.64
37375--37439	25	2.6	25	97	0	121	36	9	3	50	1.50
41185--41300	61	1.9	61	81	0	142	28	12	18	40	1.87
56728--56780	23	2.3	23	86	0	70	28	26	7	37	1.83
57903--57945	6	6.8	6	85	15	52	51	13	18	16	1.77
62741--62767	2	13.5	2	100	0	54	51	0	0	48	1.00
64133--64168	2	18.0	2	100	0	72	50	0	0	50	1.00
65880--65942	28	2.2	28	94	0	108	36	7	14	41	1.75
73201--73239	18	2.2	18	86	9	53	43	5	17	33	1.72
80591--80628	18	2.1	19	90	5	60	34	13	2	50	1.55
80601--80652	19	2.8	19	82	2	61	26	17	7	48	1.74
85099--85150	19	2.7	19	96	0	95	36	15	13	34	1.87
88250--88307	25	2.3	25	85	5	73	56	0	5	37	1.21
89138--89164	13	2.1	13	100	0	54	40	29	22	7	1.81
89286--89336	12	4.3	12	76	18	54	31	0	1	66	1.03
89319--89541	24	8.7	27	76	15	147	44	0	1	53	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89294--89464	12	13.7	12	70	20	111	40	0	1	57	1.09
89298--89521	64	3.6	64	92	5	345	43	0	1	54	1.08
89325--89542	88	2.5	87	87	8	291	45	0	1	53	1.09
89537--89598	19	3.3	19	78	15	58	37	1	0	61	1.06
90067--90126	31	1.9	31	93	0	102	43	10	6	40	1.64
94171--94274	52	2.0	52	98	0	199	37	15	14	32	1.88
100091--100134	14	3.1	14	84	12	54	68	9	2	20	1.28
101182--101231	3	16.3	3	88	12	75	64	0	2	34	1.05
102583--102779	13	14.3	13	72	14	103	47	4	5	43	1.44
102581--102877	15	19.4	15	68	16	105	48	3	4	42	1.41
102577--102626	11	4.5	11	78	14	57	52	2	2	44	1.24
102662--102716	18	3.1	18	79	10	67	47	5	1	45	1.36
102571--102877	26	11.2	27	66	20	106	49	3	4	42	1.40
102769--102808	18	2.2	18	95	0	71	60	5	2	32	1.32
103112--103216	7	15.0	7	80	7	79	23	0	25	50	1.49
103112--103216	21	5.0	21	83	0	120	23	0	25	50	1.49
103445--103490	19	2.3	21	88	7	69	23	34	0	41	1.55
104056--104092	2	18.5	2	100	0	74	48	0	0	51	1.00
104190--104244	19	2.9	18	86	7	58	41	0	32	25	1.56
104200--104244	20	2.3	20	92	3	74	42	0	35	22	1.54
104600--104656	21	2.6	21	74	23	55	36	5	0	57	1.21
105000--105078	16	4.9	16	95	0	122	41	12	24	21	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105817--106333	171	3.0	171	99	0	1027	50	7	9	32	1.61
108191--108396	43	4.8	43	73	5	132	28	16	22	32	1.96
108327--108409	43	1.9	43	85	4	114	28	18	18	34	1.94

Tables:   1

The End!