Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003660.1 Hibiscus syriacus cultivar Beakdansim tig00007792_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  174110

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4427--4492
31
2.1
31
81
10
73
36
7
21
34
1.82
9859--9906
9
5.4
9
85
2
53
0
6
12
81
0.87
9847--9907
27
2.3
27
85
2
79
4
4
11
78
1.06
9866--9911
9
5.2
9
86
2
67
0
4
8
86
0.68
15170--15213
22
2.0
22
86
8
63
15
6
18
59
1.58
16340--16499
44
3.7
44
88
2
225
27
20
10
41
1.85
21302--21509
44
4.7
44
89
0
299
25
21
11
41
1.86
21288--21509
88
2.5
88
89
0
336
24
21
12
41
1.87
23290--23368
38
2.1
38
100
0
158
45
16
10
27
1.79
42729--42805
2
38.5
2
100
0
154
50
0
0
49
1.00
43193--43591
186
2.2
182
91
4
631
41
3
9
45
1.53
62109--62642
55
9.9
55
86
4
587
29
25
16
28
1.97
62102--62635
102
5.0
109
83
7
445
28
25
16
28
1.97
62645--62751
36
2.9
36
86
2
151
21
19
19
39
1.93
62646--62754
37
3.0
36
87
1
146
22
19
20
38
1.93
64063--64133
26
2.8
24
75
24
67
7
19
1
71
1.16
64028--64118
19
5.5
16
73
20
64
7
20
1
70
1.19
64093--64125
9
3.9
9
84
15
52
9
18
0
72
1.10
64096--64133
9
4.2
9
83
9
51
5
18
0
76
0.97
73771--73869
45
2.1
47
85
9
132
40
19
10
30
1.84
79880--79904
2
12.5
2
100
0
50
52
0
0
48
1.00
88000--88416
106
3.9
106
89
2
626
23
17
24
34
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
89242--89285
22
2.0
22
100
0
88
22
13
27
36
1.92
89243--89296
22
2.5
22
90
0
72
24
16
25
33
1.96
93198--93228
2
15.5
2
100
0
62
51
0
0
48
1.00
93248--93305
21
2.9
19
76
18
57
63
0
3
32
1.11
93257--93308
19
2.6
19
80
17
52
65
0
3
30
1.10
93269--93372
22
4.8
21
72
18
79
61
1
4
31
1.28
93841--93937
37
2.6
37
86
0
140
30
12
16
40
1.85
96968--97026
21
2.8
21
94
0
100
50
22
6
20
1.71
98182--98290
41
2.7
41
82
1
139
37
14
17
30
1.90
105325--105396
24
3.0
24
93
0
117
19
25
15
40
1.90
120159--120222
32
2.0
32
96
0
119
31
0
32
35
1.58
125330--125399
34
2.1
32
89
5
104
21
31
15
31
1.95
125614--125653
21
1.9
22
90
10
66
12
10
40
37
1.77
125681--125723
21
2.0
21
95
0
77
27
27
20
23
1.99
125815--125894
21
4.0
21
75
21
91
12
27
37
22
1.90
125837--125866
15
2.0
15
100
0
60
13
26
33
26
1.93
125984--126042
29
2.0
31
93
6
104
44
16
3
35
1.65
126759--126800
19
2.3
18
87
4
57
33
21
26
19
1.97
130917--130952
2
18.0
2
100
0
72
50
0
0
50
1.00
132200--132238
19
2.1
19
85
0
51
64
12
2
20
1.40
132363--132449
29
3.0
28
75
9
75
60
6
12
19
1.54
133814--133857
3
15.3
3
86
9
65
63
2
0
34
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
133821--133867
23
2.0
23
84
8
60
65
2
0
31
1.04
134015--134464
134
3.4
134
81
5
500
24
18
30
27
1.97
134217--134312
40
2.3
40
84
8
113
22
17
36
22
1.95
134472--134564
29
3.2
29
80
8
100
45
15
12
26
1.82
134520--134749
64
3.5
64
79
8
223
43
16
16
23
1.88
135205--135345
65
2.1
67
80
5
153
41
14
12
31
1.83
135117--135352
67
3.6
65
74
7
192
38
13
12
35
1.82
135316--135377
33
1.9
33
93
3
108
40
16
9
33
1.81
135879--135940
4
16.0
4
83
6
83
27
1
22
48
1.60
136981--141535
4
1155.5
4
94
3
7910
25
0
25
48
1.57
147525--147568
22
2.0
22
82
8
54
18
15
40
25
1.90
147794--147879
3
29.7
3
93
6
151
66
0
0
33
0.92
152288--152544
110
2.4
108
87
2
374
24
18
23
33
1.96
156503--156556
27
1.9
29
85
7
76
62
0
0
37
0.95
156501--156539
13
2.9
13
88
3
51
66
0
0
33
0.92
156914--156998
31
2.7
32
83
9
111
29
14
18
37
1.90
157041--157099
23
2.5
24
83
8
77
69
0
0
30
0.89
161483--161516
17
1.9
18
88
5
52
55
11
0
32
1.36
164778--164815
11
3.4
11
92
7
67
78
0
0
21
0.74
166007--166050
23
1.9
23
81
9
54
47
2
6
43
1.42
166021--166078
27
2.1
27
81
6
64
55
5
1
37
1.33
165993--166090
28
3.6
28
73
10
80
52
4
3
40
1.36

Tables:   1

The End!