genome.fa.s3666.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003666.1 Hibiscus syriacus cultivar Beakdansim tig00007831_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80556

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3121--3181	19	3.2	18	84	9	77	42	9	16	31	1.81
3961--4074	42	2.7	43	91	4	196	59	12	10	17	1.60
11512--11557	13	3.8	12	78	21	51	73	8	17	0	1.07
11506--11557	24	2.2	24	86	6	70	75	7	15	1	1.12
13714--13821	42	2.6	41	77	4	117	25	21	22	30	1.98
13981--14041	20	3.0	20	76	11	61	19	24	26	29	1.99
13642--14148	262	1.9	261	86	4	727	28	17	21	31	1.96
14541--14659	40	2.9	42	91	7	199	61	10	10	17	1.56
19292--19402	20	6.0	21	68	25	88	25	28	20	25	1.99
19292--19379	16	4.9	17	70	25	58	26	27	21	25	1.99
19293--19398	36	2.9	36	90	0	167	25	28	20	25	1.99
20811--20885	33	2.2	34	95	4	143	36	16	10	37	1.83
33334--34267	229	4.1	229	94	2	1639	44	7	8	39	1.62
34106--34172	28	2.4	27	77	5	71	49	2	4	43	1.38
34084--34174	28	3.3	26	73	8	67	46	3	5	45	1.43
34181--34220	21	1.9	21	85	10	55	65	5	5	25	1.34
34317--34362	20	2.3	19	89	10	74	56	10	15	17	1.67
34561--34627	30	2.2	29	82	10	73	52	4	0	43	1.21
36821--36856	15	2.4	15	90	0	54	61	2	27	8	1.39
37048--37105	13	4.7	13	73	16	52	31	1	41	25	1.66
36991--37106	35	3.3	35	90	1	178	34	3	37	25	1.73
41014--41129	35	3.3	35	90	1	187	31	3	37	26	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41071--41128	13	4.7	13	68	12	50	29	1	41	27	1.66
41687--41729	20	2.0	21	86	8	61	23	23	23	30	1.99
45687--45719	16	2.0	17	94	5	59	42	0	24	33	1.55
47830--47902	34	2.1	34	85	5	94	42	20	1	35	1.61
48491--48582	43	2.1	43	89	0	139	32	29	8	29	1.87
49298--49366	31	2.2	31	81	0	84	46	14	14	24	1.82
50890--50928	17	2.4	17	86	4	53	25	2	10	61	1.41
54206--54250	23	1.9	24	86	4	65	64	13	0	22	1.28
55615--55673	21	2.8	21	97	0	109	23	25	25	25	2.00
55734--55887	64	2.4	65	85	10	194	32	18	22	25	1.97
56018--56053	18	2.0	18	94	0	63	33	8	16	41	1.78
56243--56276	12	2.7	13	86	9	52	41	5	8	44	1.60
56552--56619	28	2.4	28	85	7	84	57	20	1	20	1.49
56552--56640	30	3.1	28	82	9	92	57	20	2	20	1.52
58580--58650	23	3.2	23	65	15	58	33	19	16	29	1.94
58573--58638	21	3.0	21	71	6	60	33	18	15	33	1.92
58573--58678	44	2.4	44	85	6	144	33	18	16	31	1.94
64425--64577	65	2.4	64	89	5	220	30	18	22	27	1.98
68445--68554	6	18.2	6	69	19	61	26	1	3	68	1.16
72021--72080	27	2.2	27	82	11	70	36	15	6	41	1.73
72874--72927	22	2.5	22	75	3	56	37	11	14	37	1.82
79117--79165	23	2.1	23	85	7	64	59	12	2	26	1.44

Tables:   1

The End!