Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003674.1 Hibiscus syriacus cultivar Beakdansim tig00007848_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  403236

Tables:   1   2   

This is table  2  of  2  ( 160 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
270476--270699
96
2.3
95
83
6
258
28
21
14
35
1.93
276256--276293
14
2.9
13
81
11
51
52
5
2
39
1.38
276271--276383
9
13.4
9
67
19
57
49
5
2
42
1.39
276837--276882
25
2.0
23
83
12
58
32
15
17
34
1.91
285517--285559
20
2.2
20
83
4
52
25
37
25
11
1.90
285931--285962
2
16.0
2
100
0
64
50
0
0
50
1.00
288025--288386
21
17.4
20
78
12
270
22
19
20
37
1.94
288044--288386
42
8.2
42
79
11
316
22
19
19
38
1.94
288065--288344
105
2.7
104
94
1
481
22
19
20
37
1.94
288479--288509
6
5.2
6
92
0
53
35
45
16
3
1.63
289012--289064
6
9.3
6
97
2
85
0
16
52
30
1.44
289157--289249
40
2.3
42
94
3
163
36
23
19
20
1.95
289148--289266
21
5.8
20
71
10
89
33
21
20
24
1.97
289342--289396
21
2.6
21
91
0
83
32
27
20
20
1.97
295274--295298
12
2.1
12
100
0
50
48
8
28
16
1.74
306185--306225
20
2.0
20
95
0
73
26
21
12
39
1.89
307379--307451
24
3.0
24
90
4
76
12
15
23
49
1.78
307389--307444
14
4.3
14
80
17
75
10
14
23
51
1.73
307390--307464
24
3.1
24
92
3
116
12
12
20
56
1.67
308412--308486
10
7.7
10
71
21
61
10
12
21
56
1.66
308418--308482
16
4.1
16
91
0
112
9
12
21
56
1.63
308553--308595
16
2.7
16
100
0
86
6
11
23
58
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
315413--315489
6
12.8
6
88
0
91
25
33
24
15
1.95
315797--315841
24
1.9
23
82
13
56
31
2
2
64
1.18
316525--316580
24
2.3
24
96
0
103
30
17
14
37
1.90
320448--320545
21
4.7
21
94
0
169
21
31
26
20
1.98
327920--327980
21
2.7
23
82
12
81
31
31
18
19
1.96
328694--328747
26
2.1
26
100
0
108
33
33
3
29
1.75
329168--329232
13
5.5
13
78
14
54
61
0
1
36
1.05
329177--329263
16
5.3
16
77
10
68
59
0
2
37
1.10
331798--332524
55
13.2
55
84
3
879
37
17
17
27
1.92
331798--332524
221
3.3
217
83
5
845
37
17
17
27
1.92
331798--332507
276
2.6
276
89
0
1064
37
17
17
27
1.92
332700--332757
29
2.0
29
82
0
71
46
6
20
25
1.75
337849--338426
55
10.5
55
84
2
721
37
19
17
25
1.93
345490--345550
29
2.1
30
84
3
79
49
16
18
16
1.80
348469--348516
18
2.7
18
96
0
87
27
27
18
27
1.98
355765--355902
2
70.0
2
83
11
151
47
2
2
48
1.26
375297--375331
13
2.6
13
90
4
52
48
8
11
31
1.69
397363--397438
23
3.4
23
71
8
77
25
22
26
26
2.00

Tables:   1   2

The End!