genome.fa.s3694.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003694.1 Hibiscus syriacus cultivar Beakdansim tig00007895_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  787758

Tables:   1   2   3   

This is table  3  of  3  ( 323 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
604819--604863	23	2.0	23	86	0	63	57	6	2	33	1.37
609259--609312	27	2.0	27	96	0	99	20	14	12	51	1.75
612283--612335	22	2.5	21	79	11	63	69	3	0	26	1.05
615127--615213	31	2.8	31	74	11	81	37	10	17	34	1.84
615575--615614	20	2.0	21	85	5	55	57	12	7	22	1.60
617909--617943	16	2.1	17	94	5	63	31	8	25	34	1.86
618693--618725	15	2.1	16	88	5	50	51	15	24	9	1.72
623650--623692	23	1.9	22	86	13	61	32	4	6	55	1.47
624284--624310	5	5.4	5	100	0	54	18	0	0	81	0.69
627386--627425	19	2.0	20	90	4	64	35	10	17	37	1.83
628110--628230	31	4.0	31	84	6	149	37	20	19	22	1.95
628110--628230	62	2.0	60	86	3	170	37	20	19	22	1.95
636967--637123	43	3.7	43	87	3	219	32	19	19	28	1.96
636968--637123	42	3.6	42	87	5	206	32	19	19	28	1.96
637245--637291	21	2.2	21	96	0	85	53	21	6	19	1.67
640218--640689	41	11.5	40	79	8	398	33	19	17	28	1.95
640215--640701	124	3.9	123	78	7	477	34	20	17	28	1.95
641233--641269	18	2.1	18	94	0	65	37	21	8	32	1.83
642195--642243	4	12.2	4	86	0	53	0	61	0	38	0.96
642197--642243	14	3.4	14	90	0	67	0	61	0	38	0.96
642871--642926	28	2.0	28	100	0	112	46	7	3	42	1.48
647945--647976	2	16.5	2	93	6	57	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
648629--648761	66	2.0	66	94	0	230	41	11	10	36	1.75
656395--656705	157	2.0	154	98	1	595	33	18	18	30	1.94
659260--659318	30	2.0	28	87	9	82	35	3	18	42	1.67
659260--659318	29	2.0	30	90	6	93	35	3	18	42	1.67
659408--659508	21	5.1	21	82	13	124	25	37	24	11	1.90
659436--659464	15	1.9	15	100	0	58	31	34	20	13	1.92
659415--659485	36	2.0	36	91	0	115	26	35	23	14	1.93
659542--659584	21	2.0	21	100	0	86	13	44	27	13	1.83
659620--659661	21	2.0	21	90	4	68	23	21	26	28	1.99
659687--659726	20	1.9	22	90	10	66	37	40	10	12	1.77
659942--660011	34	2.1	32	89	5	104	31	15	31	21	1.95
662988--663034	24	1.9	25	82	4	60	38	2	46	12	1.54
663593--663633	2	20.5	2	100	0	82	51	0	0	48	1.00
663633--663666	2	17.0	2	100	0	68	50	0	50	0	1.00
669720--669782	27	2.3	27	100	0	126	41	12	3	42	1.59
671560--671943	194	2.0	190	97	2	732	33	17	19	29	1.95
680124--680327	102	2.0	100	97	1	381	42	13	4	39	1.65
680386--680423	16	2.2	17	86	9	51	55	5	2	36	1.37
691034--691086	19	2.7	20	74	11	56	35	0	1	62	1.06
696966--697019	2	27.0	2	100	0	108	50	0	0	50	1.00
701160--701236	37	2.1	36	83	9	93	46	1	3	48	1.28
701469--701502	6	6.0	6	96	3	54	29	52	17	0	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
701985--702018	6	5.7	6	92	0	59	0	14	47	38	1.45
702178--702250	21	3.5	21	92	0	119	21	23	26	28	1.99
702399--702433	2	17.5	2	100	0	70	51	0	0	48	1.00
704298--704334	13	2.9	13	81	18	51	32	0	2	64	1.07
705934--705964	13	2.3	14	94	5	55	41	0	0	58	0.98
708696--708740	3	15.0	3	100	0	90	33	0	0	66	0.92
712158--712441	139	2.0	142	95	4	520	33	19	15	31	1.93
714140--714201	6	10.3	6	94	0	106	62	0	0	37	0.95
714503--714535	2	16.5	2	100	0	66	48	0	0	51	1.00
719110--719161	22	2.4	22	90	0	86	21	25	34	19	1.96
719224--719266	20	2.0	21	86	8	61	53	6	6	32	1.55
726076--726511	43	10.2	42	91	3	579	31	19	24	24	1.98
727346--727399	26	2.1	26	100	0	108	51	11	18	18	1.74
730540--730849	41	7.6	41	80	4	196	36	17	18	28	1.93
730575--731049	82	5.8	81	83	3	447	33	18	20	28	1.96
730613--731049	41	10.7	41	79	4	352	32	18	19	28	1.96
730630--731049	164	2.6	161	82	4	504	33	18	19	27	1.96
739489--739602	57	2.0	57	98	0	219	45	4	5	44	1.46
740565--740620	16	3.6	16	72	13	62	42	3	5	48	1.43
740556--740621	31	2.2	30	91	2	105	42	4	6	46	1.48
745068--745103	13	2.8	14	84	16	51	58	2	0	38	1.13
745524--745574	21	2.5	20	84	6	66	74	1	1	21	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
756264--756289	4	6.5	4	100	0	52	76	0	0	23	0.78
760296--760322	3	9.0	3	100	0	54	33	0	0	66	0.92
761122--761188	2	33.5	2	100	0	134	50	0	0	49	1.00
772596--772666	12	5.9	12	73	6	54	18	11	18	52	1.74
772560--772670	48	2.3	48	84	6	127	21	12	16	49	1.78
772598--772670	24	3.0	24	80	7	94	20	9	17	52	1.73
773440--773481	20	2.2	18	91	8	66	54	0	2	42	1.13
777858--777928	33	2.3	30	80	7	79	45	0	2	52	1.15
782367--782421	21	2.6	21	77	8	58	34	21	20	23	1.97
782409--782657	20	12.4	20	84	5	245	37	25	17	18	1.93
783350--783396	24	2.0	24	87	8	69	25	14	21	38	1.92
785864--786081	34	6.2	33	68	18	136	46	18	22	13	1.83
785908--786087	72	2.5	72	96	0	324	45	17	23	14	1.85
785864--786081	53	4.1	53	79	14	229	46	18	22	13	1.83
786058--786173	53	2.2	52	86	3	160	18	23	18	38	1.93
786096--786183	19	4.8	19	82	14	123	13	22	15	47	1.81
786274--786310	14	2.6	14	91	0	65	45	21	0	32	1.52

Tables:   1   2   3

The End!