genome.fa.s3701.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003701.1 Hibiscus syriacus cultivar Beakdansim tig00007915_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  316188

Tables:   1   2   

This is table  1  of  2  ( 193 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4031--4065	18	1.9	18	88	11	54	45	20	14	20	1.85
5022--5068	17	2.6	19	76	6	53	19	6	29	44	1.75
6011--6081	20	3.5	20	69	14	65	32	14	16	36	1.89
9167--9203	19	1.9	19	88	0	56	40	8	16	35	1.78
12690--12750	32	1.9	32	82	0	77	26	21	14	37	1.92
15669--16112	104	4.3	103	78	6	377	34	12	19	34	1.89
15777--16112	101	3.3	101	80	5	343	34	12	18	33	1.89
25374--25429	20	2.8	20	83	0	67	35	14	17	32	1.90
27819--27862	16	2.7	17	77	22	58	36	25	4	34	1.76
31253--31306	19	2.6	22	82	8	69	33	12	18	35	1.89
31652--32040	54	7.2	54	85	0	481	33	16	18	31	1.93
31652--32040	162	2.4	161	86	3	530	33	16	18	31	1.93
31655--32093	108	4.1	108	79	4	312	33	16	19	30	1.94
32270--32450	91	2.0	91	97	0	344	32	16	14	35	1.90
43346--43384	20	1.9	20	84	5	51	35	15	20	28	1.93
45460--45797	54	6.3	54	89	0	505	35	15	18	30	1.92
45460--45842	54	7.1	53	84	4	381	35	16	18	30	1.93
45460--45842	108	3.5	107	83	2	453	35	16	18	30	1.93
45460--45842	162	2.4	162	86	4	461	35	16	18	30	1.93
46739--46767	15	2.0	15	93	6	51	55	13	6	24	1.63
49925--50031	39	2.9	37	85	10	141	49	15	3	30	1.62
53204--53322	41	2.9	41	88	5	195	18	20	25	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53311--53468	41	3.9	41	92	3	273	14	22	25	36	1.93
53205--53466	82	3.2	83	84	5	284	16	21	25	36	1.94
53208--53425	103	2.1	103	88	5	325	17	21	25	35	1.95
53204--53466	144	1.8	144	94	1	465	16	21	25	36	1.94
53473--53534	5	11.6	5	98	1	88	25	54	19	0	1.44
54024--54071	6	8.5	6	97	2	75	0	16	54	29	1.43
54134--54359	41	5.5	40	91	2	308	37	25	20	16	1.94
54135--54363	21	11.1	21	69	6	137	37	25	20	16	1.93
54130--54359	82	2.8	82	90	1	345	36	24	20	18	1.95
54130--54359	123	1.9	123	90	1	372	36	24	20	18	1.95
56465--56523	26	2.2	26	82	8	66	28	3	0	67	1.06
56706--56780	20	3.8	20	79	11	91	36	24	16	24	1.94
56772--56818	20	2.3	20	92	0	76	34	21	17	27	1.95
56812--56857	20	2.3	20	88	7	67	41	26	17	15	1.88
56706--56857	40	3.8	38	68	20	91	38	22	16	23	1.93
56946--57100	76	2.0	76	91	0	247	29	16	16	37	1.91
57047--57098	20	2.6	20	87	0	77	25	15	23	36	1.93
57124--57170	20	2.3	20	88	0	76	34	25	17	23	1.96
57092--57321	77	3.0	77	94	0	397	36	20	14	27	1.92
57199--57252	20	2.7	20	80	13	65	35	22	12	29	1.91
57276--57344	20	3.5	20	93	0	111	34	24	14	26	1.94
57199--57406	97	2.1	97	90	0	335	36	22	14	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57276--57337	20	3.1	20	97	0	115	33	22	14	29	1.94
57316--57425	57	1.9	57	94	0	193	36	21	15	26	1.93
57459--57710	20	12.6	20	80	9	221	21	15	22	40	1.90
57459--57653	60	3.2	60	89	2	275	21	15	22	41	1.90
57459--57750	40	7.3	40	73	17	196	21	15	24	39	1.92
59295--59535	133	1.8	132	84	7	337	45	8	7	37	1.64
59554--59602	22	2.3	21	82	3	62	53	2	0	44	1.12
59561--59614	22	2.4	21	84	9	63	55	0	0	44	0.99
60884--60938	26	2.1	26	89	0	83	9	18	32	40	1.82
61133--61998	76	11.3	76	97	0	1579	34	22	21	21	1.97
62679--62733	22	2.5	22	90	0	92	38	14	12	34	1.84
63101--63324	54	4.1	54	94	0	376	24	19	15	40	1.90
63996--64605	116	5.2	115	92	1	889	31	20	11	36	1.89
65427--65710	93	3.0	93	87	4	428	35	18	15	30	1.92
67934--67968	2	17.5	2	93	0	61	48	0	0	51	1.00
70207--70245	14	2.8	14	85	11	53	58	7	17	15	1.59
72759--73002	136	1.8	135	84	7	343	45	8	7	37	1.64
73021--73069	22	2.3	21	82	3	62	53	2	0	44	1.12
73028--73081	22	2.4	21	84	9	63	55	0	0	44	0.99
74348--74402	26	2.1	26	89	0	83	9	18	32	40	1.82
74409--74446	3	12.7	3	83	10	51	63	0	0	36	0.95
76514--76548	19	1.9	17	88	11	52	40	0	22	37	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77318--77401	39	2.2	39	86	0	123	14	29	23	32	1.94
77318--77429	39	2.9	39	80	4	111	17	27	23	31	1.97
77393--77734	43	8.0	43	87	0	486	23	23	19	33	1.97
79631--79696	29	2.2	29	89	2	96	59	4	6	30	1.42
79652--79710	27	2.1	28	81	6	66	52	5	6	35	1.50
79743--79806	27	2.4	26	81	5	65	51	3	10	34	1.53
79805--79839	17	2.1	17	89	5	54	65	2	0	31	1.07
80285--80747	114	4.1	112	81	4	457	33	10	16	39	1.82
80255--80736	228	2.1	228	82	4	569	33	10	16	39	1.84
87220--87438	2	112.5	2	70	15	120	43	6	1	48	1.39
87987--88249	134	2.0	134	86	1	375	30	19	19	31	1.96
89786--89830	21	2.1	21	87	0	63	31	28	24	15	1.96
90846--90871	2	13.0	2	100	0	52	50	0	0	50	1.00
91338--91642	149	2.0	149	98	0	592	27	16	21	34	1.95
91621--91665	23	2.0	23	86	0	63	20	24	28	26	1.99
94877--94921	21	2.1	21	87	0	63	31	28	24	15	1.96
96424--96728	149	2.0	149	97	0	574	28	16	20	34	1.95
96707--96751	23	2.0	23	86	0	63	20	24	28	26	1.99
97714--97757	24	1.9	23	86	9	63	6	18	0	75	1.02
108206--108244	19	2.1	19	85	0	51	58	12	0	28	1.34
113315--113608	145	2.0	146	97	0	563	15	26	26	31	1.96
113788--113840	2	26.5	2	81	7	63	41	3	1	52	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113822--113919	25	3.7	26	81	9	99	45	7	0	46	1.30
113848--114012	63	2.7	59	72	12	152	42	6	0	50	1.28
113810--113982	89	1.9	95	84	8	241	44	6	0	48	1.29
114373--114398	2	13.0	2	100	0	52	50	0	0	50	1.00
114521--114628	2	54.0	2	100	0	216	50	0	0	50	1.00
115168--115220	3	17.3	3	96	3	97	35	0	0	64	0.94
117463--117522	25	2.6	22	80	17	68	43	6	1	48	1.39
119986--120013	10	2.8	10	100	0	56	17	60	21	0	1.36
120037--120075	10	3.8	11	90	9	57	17	20	25	35	1.95
120047--120089	19	2.1	21	83	8	54	16	25	27	30	1.97
120086--120120	18	1.9	18	100	0	70	17	48	22	11	1.79
120128--120265	29	5.0	28	69	16	90	29	7	22	40	1.81
120157--120307	29	5.4	28	74	14	107	33	5	21	39	1.77
120987--121055	24	2.9	24	77	0	75	24	13	18	43	1.86
122856--122885	13	2.2	14	94	5	53	40	13	26	20	1.89
123056--123083	3	9.3	3	100	0	56	0	0	32	67	0.91
125944--126005	31	2.0	31	90	0	97	54	11	1	32	1.45
129646--129672	2	13.5	2	100	0	54	51	0	0	48	1.00
131473--131502	6	4.8	6	95	4	51	63	0	0	36	0.95
149116--149177	27	2.2	28	85	2	81	45	24	9	20	1.81
150026--150075	24	2.1	24	88	0	73	24	10	18	48	1.78
157793--157873	24	3.5	24	70	20	75	22	24	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159415--159458	21	2.1	21	86	0	61	9	40	15	34	1.79
160522--160629	46	2.4	46	80	13	125	34	20	17	27	1.95
160567--160691	64	1.9	65	87	4	182	29	23	20	27	1.98
160663--160711	19	2.6	19	84	9	57	24	28	20	26	1.99
170788--170838	22	2.3	22	93	0	84	39	9	31	19	1.84
175983--176045	24	2.7	23	78	9	65	49	3	0	47	1.17
176461--176513	26	2.0	27	82	14	65	22	16	11	49	1.78
179509--179567	29	2.0	29	96	0	109	23	13	15	47	1.81
186673--186698	11	2.4	11	100	0	52	38	0	0	61	0.96
189038--189151	30	3.8	30	86	0	156	28	21	28	21	1.99

Tables:   1   2