genome.fa.s3701.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003701.1 Hibiscus syriacus cultivar Beakdansim tig00007915_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  316188

Tables:   1   2   

This is table  2  of  2  ( 193 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
189070--189149	15	5.3	15	70	0	70	30	20	27	22	1.98
190667--190730	31	2.1	31	87	0	92	54	9	7	28	1.60
194323--194563	120	2.0	120	96	0	446	21	32	19	26	1.97
194534--194662	24	5.4	24	96	0	213	17	37	20	24	1.93
194763--194974	105	2.0	105	87	0	307	17	26	23	32	1.97
196861--196935	32	2.4	32	80	8	84	24	6	17	52	1.68
197691--197724	13	2.5	13	90	4	50	41	2	5	50	1.42
201344--201374	15	2.1	15	100	0	62	41	6	19	32	1.77
201769--201851	28	2.8	28	83	10	87	56	1	8	33	1.37
210076--210147	24	3.0	23	84	6	90	50	18	11	20	1.77
210080--210171	12	7.8	12	71	16	57	47	18	14	19	1.82
210078--210168	47	1.9	48	82	10	116	48	17	14	19	1.81
215067--215176	24	4.6	24	74	10	93	48	17	14	20	1.81
215075--215159	12	7.3	11	70	17	55	49	17	14	18	1.80
215069--215159	47	1.9	47	82	10	114	49	17	14	18	1.80
219629--219656	12	2.3	12	100	0	56	28	0	21	50	1.49
221638--221718	3	27.0	3	85	9	112	38	0	0	61	0.96
222767--222813	20	2.3	21	75	10	53	25	4	8	61	1.43
225282--225339	14	4.2	14	82	4	64	25	13	5	55	1.59
225314--225338	13	1.9	13	100	0	50	16	16	12	56	1.68
228555--228587	12	2.8	12	95	0	57	87	0	12	0	0.53
230852--231079	114	2.0	114	92	0	384	36	14	17	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
232219--232390	76	2.3	76	84	1	211	30	14	22	32	1.94
233595--233649	22	2.5	22	84	0	74	34	14	12	38	1.84
234051--234371	115	2.8	115	95	2	573	38	15	19	26	1.92
234319--234374	17	3.2	16	69	26	51	46	12	19	21	1.83
234316--234411	40	2.5	38	91	6	151	48	10	20	19	1.78
234201--234524	151	2.1	151	94	3	571	41	14	19	24	1.89
234327--234389	17	3.4	19	70	26	62	50	11	22	15	1.75
234352--234750	115	3.5	115	95	2	720	39	15	19	26	1.91
234698--234753	17	3.2	16	69	26	51	46	12	19	21	1.83
234695--234790	40	2.5	38	91	6	151	48	10	20	19	1.78
234051--235128	379	2.8	379	97	0	2034	38	15	19	26	1.91
234580--234903	151	2.1	151	94	3	571	40	15	19	24	1.90
234706--234768	17	3.4	19	70	26	62	50	11	22	15	1.75
234201--235018	264	3.1	265	87	7	1053	39	15	19	25	1.91
234731--235146	228	1.8	228	97	0	787	38	15	19	26	1.92
234731--235136	113	3.6	113	94	1	731	38	15	19	26	1.91
235190--235248	17	3.4	17	66	25	50	50	11	22	15	1.76
235481--235559	9	9.4	8	75	14	54	35	0	0	64	0.94
235492--235560	3	23.0	3	85	11	97	37	0	0	62	0.96
236611--236657	20	2.3	21	75	10	53	25	4	8	61	1.43
241768--241804	17	2.2	17	90	9	58	29	0	5	64	1.15
243887--243923	17	2.2	17	90	9	58	29	0	5	64	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
251119--251179	29	2.1	29	100	0	122	42	13	14	29	1.84
259190--259247	29	2.0	29	83	6	73	43	6	15	34	1.74
267998--268066	36	1.9	36	85	2	95	56	1	1	40	1.17
273274--273347	19	4.1	16	71	25	51	66	4	4	25	1.27
274783--274848	3	22.0	3	93	0	114	63	0	1	34	1.04
275375--275702	113	2.9	113	87	2	455	28	19	14	37	1.91
276082--276147	20	3.2	20	84	4	87	40	13	15	30	1.85
276064--276147	22	4.0	21	81	7	98	38	15	13	33	1.86
283726--283764	20	2.0	20	84	0	51	64	7	10	17	1.48
283861--283895	7	5.0	7	86	13	54	54	14	17	14	1.72
283863--283891	15	1.9	15	100	0	58	55	13	17	13	1.70
283970--284056	43	2.0	44	88	2	131	35	24	10	29	1.88
284841--284931	46	1.9	49	84	6	125	29	20	14	35	1.92
285415--285466	15	3.4	15	73	10	52	65	0	3	30	1.10
285413--285452	13	3.1	13	85	10	55	65	0	2	32	1.06
286377--286450	19	4.1	16	71	25	51	66	4	4	25	1.27
287900--287950	3	17.0	3	87	0	66	58	0	3	37	1.16
290945--290989	23	2.0	22	86	4	63	28	24	20	26	1.99
293866--293986	54	2.2	53	86	5	163	28	27	17	26	1.97
295262--295304	18	2.6	17	89	10	63	9	32	0	58	1.30
295273--295322	21	2.4	21	89	0	82	18	30	0	52	1.46
306994--307024	15	2.1	15	93	0	53	61	0	16	22	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308631--308668	19	2.0	19	85	10	51	52	5	0	42	1.24
310032--310082	20	2.7	20	81	6	61	72	11	1	13	1.20
311156--311207	24	2.2	24	85	0	68	9	15	26	48	1.76
311166--311207	14	3.3	14	75	25	56	7	14	26	52	1.67
311166--311214	24	2.0	24	100	0	98	8	14	24	53	1.68
311172--311227	24	2.3	24	90	0	85	12	10	19	57	1.64
312291--312363	16	4.7	16	89	3	105	10	9	19	60	1.57

Tables:   1   2

The End!