genome.fa.s3707.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003707.1 Hibiscus syriacus cultivar Beakdansim tig00007928_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114157

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5268--5562	38	8.1	36	75	17	202	41	4	8	45	1.55
5626--5660	5	7.0	5	87	12	54	17	2	0	80	0.84
7005--7067	21	2.9	20	80	17	56	20	7	1	69	1.22
20840--21039	85	2.4	84	79	5	217	51	6	19	23	1.68
20840--21039	41	4.7	43	73	8	176	51	6	19	23	1.68
27971--28029	31	1.9	31	93	3	102	50	15	13	20	1.77
38216--38336	35	3.6	35	77	15	128	38	19	28	13	1.89
38262--38294	12	2.8	12	100	0	66	42	24	33	0	1.55
38274--38315	19	2.2	19	87	8	59	42	26	28	2	1.67
53047--53081	18	1.9	18	88	11	54	34	5	20	40	1.76
55811--55848	6	6.3	6	100	0	76	0	34	47	18	1.49
59567--59675	48	2.2	51	87	8	154	35	5	8	50	1.56
59715--59778	31	2.1	31	87	0	92	34	6	4	54	1.46
61609--61682	21	3.5	21	96	0	121	29	31	20	18	1.97
61728--61914	42	4.5	42	91	2	304	21	17	24	36	1.95
61887--61927	21	2.0	21	85	0	55	24	21	26	26	2.00
63221--63383	65	2.5	64	82	3	211	26	15	26	30	1.96
63331--63381	19	2.7	19	85	8	70	25	15	35	23	1.94
67624--67649	5	5.2	5	100	0	52	0	19	57	23	1.40
71160--71322	65	2.5	66	86	3	233	27	15	26	30	1.96
71272--71320	19	2.7	18	84	9	64	24	16	34	24	1.95
71879--72004	19	6.2	19	76	17	128	34	19	19	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71880--71987	42	2.6	42	93	0	189	35	18	21	25	1.96
71971--72016	19	2.4	19	85	0	56	41	21	15	21	1.90
71920--72036	59	2.0	60	86	5	166	36	21	18	23	1.95
72077--72123	20	2.3	20	96	0	85	25	21	29	23	1.99
72325--72380	26	2.2	26	96	0	103	26	14	12	46	1.80
73435--73573	58	2.4	58	96	1	253	30	19	13	35	1.91
84420--84459	20	2.0	20	100	0	80	15	40	20	25	1.90
88522--88969	229	2.0	227	94	1	781	45	8	7	39	1.61
89035--89080	20	2.3	19	89	10	74	54	10	17	17	1.70
89202--89248	20	2.4	19	89	10	76	55	8	17	19	1.67
89211--89253	20	2.3	18	88	11	61	53	9	16	20	1.70
91550--91615	33	2.0	33	87	0	96	28	1	45	24	1.62
93410--93453	19	2.4	19	92	3	72	31	2	9	56	1.43
93533--95346	396	4.6	398	97	1	3448	38	14	15	31	1.88
93533--95346	199	9.1	199	95	1	3306	38	14	15	31	1.88
93533--95346	794	2.3	794	98	1	3485	38	14	15	31	1.88
96808--96905	6	16.3	6	76	8	56	38	7	32	21	1.81
96836--96909	3	24.7	3	78	0	76	35	5	33	25	1.79
96811--96901	42	2.2	42	87	0	128	37	7	32	21	1.82
98378--99233	184	4.7	184	98	0	1622	35	14	15	34	1.89
101691--102639	405	2.3	404	95	3	1764	40	8	12	37	1.74
102600--102664	23	2.8	23	90	0	94	35	7	18	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102868--102904	18	2.1	18	89	0	56	32	5	10	51	1.60
102860--102906	24	2.0	24	86	0	67	34	4	14	46	1.64
103250--103288	20	2.0	20	89	0	60	25	15	10	48	1.76
104421--104480	3	20.3	3	96	3	113	33	0	0	66	0.92
104619--104661	19	2.1	21	87	8	63	51	0	0	48	1.00
106868--107068	99	2.0	100	94	1	350	38	12	9	38	1.76

Tables:   1

The End!