genome.fa.s3713.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003713.1 Hibiscus syriacus cultivar Beakdansim tig00007939_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77291

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1003--14445	4	3379.5	4	87	2	17569	43	25	6	25	1.78
14859--15106	106	2.3	104	81	11	267	31	16	10	40	1.83
15057--15178	36	3.4	35	84	6	147	31	20	12	36	1.90
15594--15668	31	2.4	30	86	8	98	29	16	13	41	1.86
15613--15738	32	3.9	32	70	13	87	27	15	15	42	1.86
15826--15958	63	2.1	64	82	2	160	30	13	12	42	1.82
15835--15973	65	2.2	63	89	2	206	32	12	12	41	1.82
16005--16074	32	2.2	33	86	2	97	37	15	10	37	1.81
16376--16469	28	3.4	28	86	7	129	23	11	12	52	1.72
16376--16484	28	3.9	28	87	2	105	22	11	13	51	1.74
16376--16484	56	1.9	56	80	10	125	22	11	13	51	1.74
16493--16844	134	2.6	133	88	0	506	24	30	17	26	1.97
17038--17085	18	2.6	18	90	3	69	33	0	2	64	1.05
25469--25510	2	21.0	2	95	0	75	52	0	0	47	1.00
25920--25944	2	12.5	2	100	0	50	52	0	0	48	1.00
26448--26516	34	2.0	34	91	0	111	31	13	11	43	1.79
27091--27704	109	5.8	104	79	9	588	21	21	25	32	1.98
28306--28463	68	2.4	65	84	4	208	36	8	22	32	1.85
28306--28489	65	2.8	65	81	4	208	38	8	21	31	1.84
28439--28534	36	2.6	36	86	4	122	39	15	18	26	1.91
28668--28826	67	2.4	67	88	4	232	34	11	22	32	1.89
28701--29075	36	10.9	36	67	16	222	37	13	21	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28869--29075	37	5.9	37	73	13	186	38	14	20	26	1.91
28768--29057	102	2.9	102	95	0	519	37	13	20	28	1.90
29936--29984	22	2.2	22	96	0	89	26	12	24	36	1.91
30607--30657	21	2.4	22	78	15	63	0	15	7	76	1.00
30613--30666	23	2.4	23	84	9	76	0	14	5	79	0.90
33757--33800	2	22.0	2	95	0	79	52	0	0	47	1.00
34018--34068	20	2.6	19	78	9	57	64	1	5	27	1.27
34207--34237	2	15.5	2	100	0	62	51	0	0	48	1.00
34288--34330	17	2.5	18	82	17	56	65	2	4	27	1.25
34744--34812	34	2.0	34	94	0	120	31	14	11	42	1.82
36497--36549	17	3.6	16	69	30	55	45	3	3	47	1.39
36488--36548	26	2.3	26	100	0	122	47	3	3	45	1.35
37429--37454	2	13.0	2	100	0	52	50	0	0	50	1.00
38032--38345	33	9.6	33	74	15	215	46	3	6	43	1.46
38118--38209	27	3.2	28	85	13	116	44	4	5	45	1.46
38118--38307	64	3.1	59	76	18	183	45	4	5	44	1.47
38177--38345	35	5.1	34	74	14	149	46	4	5	43	1.45
38109--38364	97	2.7	95	82	11	294	46	3	5	44	1.44
38175--38340	64	2.5	62	83	9	199	47	4	5	42	1.45
38402--38439	13	2.9	13	88	0	58	21	0	0	78	0.74
38398--38433	17	2.1	17	89	0	54	22	0	0	77	0.76
39120--39167	21	2.3	21	96	0	87	20	14	43	20	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41712--41827	32	3.7	30	74	14	90	20	34	23	21	1.97
42233--42316	43	2.0	43	90	0	132	35	8	2	53	1.44
43646--43683	20	1.9	20	88	0	58	26	26	5	42	1.76
45710--45747	18	2.2	17	90	4	58	44	7	0	47	1.32
47055--47118	14	4.9	14	77	11	55	59	0	0	40	0.97
55371--55421	23	2.3	23	83	6	70	19	19	41	19	1.91
68274--68311	18	2.2	17	90	4	58	44	7	0	47	1.32
69861--69932	23	3.2	23	80	2	74	61	9	12	16	1.57
70336--70381	21	2.1	22	88	4	67	71	4	13	10	1.27
75672--75701	14	2.1	15	93	6	53	63	26	3	6	1.35

Tables:   1

The End!