genome.fa.s3718.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003718.1 Hibiscus syriacus cultivar Beakdansim tig00007951_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  295015

Tables:   1   2   

This is table  2  of  2  ( 151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
254797--255075	52	5.2	52	92	5	372	46	17	21	13	1.83
254836--255075	71	3.4	71	83	13	357	47	17	21	14	1.83
254769--255113	142	2.5	138	90	5	527	46	18	21	14	1.84
254769--255097	52	6.3	54	87	10	303	46	18	21	13	1.83
255104--255186	20	4.6	19	81	15	113	14	24	18	43	1.87
255293--255329	14	2.6	14	91	0	65	45	21	0	32	1.52
257247--257312	19	3.4	19	81	10	71	46	25	16	10	1.79
257303--257359	14	3.7	14	77	20	60	45	22	21	10	1.82
257284--257376	33	2.8	33	95	0	168	47	21	20	10	1.80
257282--257381	19	5.8	18	74	21	99	47	21	21	11	1.81
257377--257505	19	7.3	19	75	17	125	8	17	28	45	1.77
257377--257468	33	2.8	33	93	3	150	7	18	28	45	1.76
257549--258114	93	6.1	93	99	0	1116	46	18	12	22	1.83
259818--259907	14	5.7	14	74	23	81	42	23	25	8	1.83
259810--259924	33	3.5	33	95	0	212	45	20	24	9	1.81
259817--259929	19	6.8	18	72	23	88	43	22	24	9	1.83
259925--259995	33	2.2	33	92	0	115	9	21	25	43	1.83
259936--260017	33	2.5	33	87	2	110	10	24	21	42	1.85
260116--260186	33	2.2	33	92	0	115	47	18	22	11	1.80
260368--260422	22	2.5	22	81	0	74	20	16	40	23	1.91
260568--260760	20	9.6	20	82	5	219	19	19	25	35	1.95
260568--260760	60	3.2	60	83	0	251	19	19	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
260816--260867	20	2.6	20	96	0	95	21	13	26	38	1.90
265155--265274	59	2.0	60	82	4	145	38	18	10	33	1.84
270596--270645	23	2.1	24	92	3	84	56	18	4	22	1.58
284669--284757	23	4.0	23	75	4	74	19	20	25	34	1.96
284669--284760	44	2.0	46	83	4	116	18	19	25	36	1.94
287491--287566	29	2.6	29	82	0	89	38	6	21	34	1.79
287439--287576	29	4.6	28	69	12	87	31	6	22	39	1.80
294726--294823	29	3.5	29	77	9	96	31	5	19	43	1.72
294743--294833	29	3.2	29	76	6	78	38	4	18	38	1.71

Tables:   1   2

The End!