genome.fa.s3719.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003719.1 Hibiscus syriacus cultivar Beakdansim tig00007952_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  341516

Tables:   1   2   

This is table  2  of  2  ( 144 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
275161--275217	20	2.9	19	82	14	64	43	10	26	19	1.83
275780--275807	14	2.0	14	100	0	56	42	21	14	21	1.88
276257--276318	31	2.2	27	83	13	72	29	29	20	20	1.98
277061--277200	60	2.4	59	84	6	183	33	19	17	29	1.95
286347--286493	69	2.1	69	93	0	249	43	17	16	23	1.87
286436--286601	51	3.3	51	92	0	278	45	15	15	23	1.84
290713--290888	54	3.1	54	66	16	140	32	20	4	42	1.72
290652--290888	115	2.1	115	98	0	456	34	19	4	41	1.71
292241--292267	2	13.5	2	100	0	54	48	0	0	51	1.00
292700--292727	14	2.0	14	100	0	56	42	21	14	21	1.88
293987--294154	60	2.8	59	82	4	194	32	19	17	30	1.95
306782--306837	20	2.9	19	75	19	62	66	1	8	23	1.30
306937--307013	22	3.3	22	80	14	75	66	0	3	29	1.10
306923--307013	22	4.1	21	76	18	69	67	0	4	28	1.10
307697--307794	37	2.6	37	85	0	115	34	12	11	41	1.78
313928--313984	23	2.4	24	85	2	71	66	0	5	28	1.13
327527--327569	15	2.9	15	85	0	68	18	37	20	23	1.94
333661--333724	33	1.9	33	93	0	110	40	15	18	25	1.90
335543--335585	14	3.1	14	86	6	61	74	0	16	9	1.06
337948--337974	14	1.9	14	100	0	54	29	40	14	14	1.86
338094--338124	16	1.9	16	93	0	53	45	22	12	19	1.84
338256--338310	17	3.1	18	76	12	51	54	0	5	40	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339159--339185	14	1.9	14	100	0	54	37	29	11	22	1.89
340860--340928	31	2.3	30	81	13	81	34	0	7	57	1.26

Tables:   1   2

The End!