genome.fa.s3731.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003731.1 Hibiscus syriacus cultivar Beakdansim tig00007978_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120964

Tables:   1   

This is table  1  of  1  ( 118 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668--720	24	2.2	24	90	3	81	18	18	20	41	1.91
3061--3241	33	5.3	33	78	9	191	44	18	22	14	1.86
3089--3116	14	2.0	14	100	0	56	42	21	21	14	1.88
3078--3175	20	5.3	19	74	16	89	42	20	21	15	1.88
3251--3330	33	2.4	33	93	0	133	11	21	21	46	1.82
3272--3330	19	3.4	19	73	22	74	13	22	18	45	1.84
3280--3330	17	3.1	17	69	25	54	13	23	17	45	1.84
3923--3989	21	3.2	21	68	4	55	19	20	35	23	1.95
3923--4045	42	2.9	41	79	7	113	22	18	36	21	1.95
4496--4875	94	4.1	94	95	1	656	47	19	12	21	1.82
6565--6677	19	6.1	19	79	13	119	45	18	23	12	1.84
6704--6781	20	3.8	20	76	5	68	16	14	15	53	1.73
7332--7605	20	13.6	20	78	6	293	20	18	24	36	1.95
7336--7605	40	6.7	40	87	2	378	20	18	24	37	1.94
7332--7605	81	3.4	81	92	1	442	20	18	24	36	1.95
7331--7646	61	5.2	61	75	10	220	20	18	24	36	1.95
8044--8114	32	2.3	29	80	15	81	40	1	1	56	1.17
8732--8796	3	21.7	3	87	0	94	1	3	27	67	1.14
8735--8796	18	3.4	18	93	0	106	1	3	27	67	1.15
9488--9538	21	2.4	20	84	15	59	80	7	9	1	0.98
12044--12153	31	3.5	31	92	0	166	40	19	19	20	1.91
12730--12782	20	2.7	20	90	0	88	26	16	18	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15683--15725	13	3.3	13	90	0	68	18	44	20	16	1.87
18275--18344	12	5.8	12	78	6	70	15	14	18	51	1.77
18238--18346	48	2.3	48	85	3	139	19	14	17	48	1.81
18238--18346	24	4.5	24	80	2	121	19	14	17	48	1.81
18506--18558	2	26.5	2	100	0	106	49	0	0	50	1.00
20460--20514	18	3.1	18	97	0	101	16	45	23	14	1.84
20491--20520	13	2.3	13	94	0	51	16	43	23	16	1.87
23038--23146	48	2.3	48	85	3	139	21	12	17	48	1.80
23075--23144	12	5.8	12	73	6	61	17	12	18	51	1.76
23040--23146	24	4.5	24	76	2	90	21	12	17	48	1.79
24559--24592	11	3.1	11	86	0	50	35	23	14	26	1.94
25300--25455	31	5.0	31	88	4	217	39	21	18	21	1.93
27135--27186	24	2.2	23	86	3	68	28	1	7	61	1.34
28222--28493	5	54.8	5	91	8	418	58	0	0	41	0.98
28222--28494	8	31.9	10	72	26	215	58	0	0	41	0.98
30279--30327	23	2.1	23	100	0	98	48	8	0	42	1.32
30889--30927	14	2.8	14	96	0	69	0	61	0	38	0.96
31025--31050	2	13.0	2	100	0	52	50	0	0	50	1.00
44189--44223	3	11.7	3	100	0	70	34	0	0	65	0.93
45935--45972	12	3.1	13	85	11	53	39	0	0	60	0.97
45936--45990	24	2.3	24	84	9	69	38	0	3	58	1.16
54220--54249	9	3.4	9	95	4	53	83	0	6	10	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54697--54772	13	5.8	13	73	17	59	80	0	18	1	0.79
54708--54750	11	4.1	11	88	5	63	88	0	11	0	0.52
54699--54758	16	3.9	16	77	14	56	85	0	15	0	0.61
54697--54755	22	2.6	23	84	13	77	83	0	16	0	0.66
54714--54775	29	2.1	29	85	8	81	82	0	16	1	0.75
54708--54758	10	5.1	10	77	17	52	86	0	13	0	0.58
54700--54763	8	8.4	8	76	22	50	82	0	17	0	0.66
54697--54763	17	3.8	17	77	13	64	82	0	17	0	0.68
56191--56228	19	2.0	19	100	0	76	21	15	36	26	1.93
57670--57923	40	6.3	40	92	0	427	30	13	12	43	1.82
57775--57838	20	3.2	20	64	24	53	31	14	10	43	1.79
57999--58370	43	8.7	43	84	7	415	28	12	28	30	1.93
57979--58391	86	4.8	86	82	7	461	29	12	27	30	1.93
57999--58382	128	3.0	128	86	4	501	28	12	28	30	1.93
58384--58731	90	3.9	90	92	1	558	25	17	22	33	1.96
58949--58986	12	3.1	13	85	11	53	39	0	0	60	0.97
64078--64148	24	3.0	24	80	0	88	18	12	16	52	1.75
64090--64146	12	4.8	12	78	8	62	14	14	19	52	1.74
64306--64344	2	19.5	2	100	0	78	48	0	0	51	1.00
66997--67050	23	2.3	23	80	6	63	61	9	1	27	1.37
69653--70002	173	2.0	176	97	2	670	33	19	16	30	1.94
77756--77811	25	2.3	25	84	9	71	23	7	17	51	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78038--78093	25	2.3	25	84	9	71	23	7	17	51	1.70
77738--78299	283	2.0	282	97	0	1061	29	8	15	46	1.75
78783--78855	27	2.7	27	84	0	83	26	26	19	28	1.98
80189--80240	22	2.5	21	85	14	72	57	11	7	23	1.59
81025--81064	21	1.9	21	85	10	55	2	17	5	75	1.10
81133--81167	18	1.9	18	94	0	61	25	8	34	31	1.86
81412--81736	44	7.4	44	70	2	231	26	18	21	33	1.96
81414--81730	88	3.6	88	92	0	492	26	18	21	32	1.97
81407--81788	88	4.3	87	86	4	254	28	17	20	32	1.96
81421--81788	176	2.1	177	81	5	433	28	17	21	32	1.96
81670--82003	121	2.8	120	87	2	463	30	18	19	32	1.95
81882--81950	33	2.1	33	88	0	102	26	21	18	33	1.97
82249--82366	36	3.2	36	89	1	173	38	15	20	26	1.92
82386--82457	37	2.0	36	88	2	108	40	9	19	30	1.84
82724--82837	42	2.7	40	77	9	120	32	22	18	26	1.97
83104--83169	22	3.2	22	63	20	61	28	15	19	36	1.92
82868--83680	39	20.9	39	90	1	1161	35	16	18	30	1.93
85934--85970	13	2.6	15	79	16	51	48	10	27	13	1.75
88359--88412	22	2.6	20	81	16	65	59	7	7	25	1.51
93796--93870	30	2.5	29	77	10	71	30	22	10	36	1.88
94020--94060	20	2.0	20	85	0	55	21	19	4	53	1.63
94474--94528	2	27.5	2	100	0	110	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98972--99029	23	2.6	22	84	10	73	37	25	17	18	1.93
99161--99236	31	2.5	29	81	8	89	28	21	13	36	1.91
100541--100589	20	2.5	20	100	0	98	30	14	16	38	1.88
105320--105415	32	3.0	31	83	7	113	41	13	13	31	1.83
105657--105734	40	2.0	40	97	0	147	24	21	29	24	1.99
108484--108678	62	3.2	59	78	8	176	44	5	15	34	1.69
108726--108798	4	18.8	4	78	5	60	15	0	34	50	1.44
108679--108818	8	18.2	8	74	10	96	12	0	36	50	1.46
108682--108867	6	31.0	6	82	0	138	10	3	40	46	1.54
108683--108867	26	7.0	26	80	3	138	10	3	40	45	1.54
108682--108867	20	9.4	20	79	8	121	10	3	40	46	1.54
108780--108841	8	7.5	8	75	13	54	6	1	48	43	1.38
108799--108927	6	20.8	6	83	6	96	2	18	50	28	1.59
108928--109081	4	38.5	4	98	0	299	24	0	25	50	1.50
109082--109150	26	2.7	26	93	0	111	43	17	4	34	1.69
109173--109224	15	3.5	15	78	5	70	32	17	11	38	1.85
109165--109231	29	2.3	29	100	0	134	37	16	8	37	1.80
109256--109292	19	1.9	19	88	0	56	37	24	8	29	1.84
109620--110172	284	2.0	280	85	5	756	32	14	5	47	1.68
113905--113936	2	16.0	2	100	0	64	50	0	0	50	1.00
114649--114764	60	1.9	60	82	3	144	37	12	15	34	1.86
116127--116170	23	1.9	23	100	0	88	29	11	27	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116197--116250	28	1.9	28	92	0	90	24	40	22	12	1.89
116974--117015	17	2.5	16	82	17	50	26	0	16	57	1.40
117005--117053	25	2.0	25	84	15	66	30	0	12	57	1.36
120110--120432	102	3.2	104	84	11	381	41	0	12	45	1.42
120318--120344	10	2.7	10	100	0	54	40	0	18	40	1.51
120308--120397	23	4.0	23	68	15	62	44	0	13	42	1.43
120409--120452	23	1.9	23	90	0	70	36	0	18	45	1.49
120054--120439	158	2.4	160	87	10	553	41	0	12	45	1.42

Tables:   1

The End!