Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003742.1 Hibiscus syriacus cultivar Beakdansim tig00008010_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73284

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8783--8816
2
17.0
2
100
0
68
50
0
0
50
1.00
9073--9192
45
2.7
45
96
1
215
37
10
10
41
1.74
11315--11374
21
2.9
21
92
0
93
43
18
15
23
1.87
16833--16863
6
5.2
6
100
0
62
32
0
16
51
1.44
17718--17757
21
1.9
21
89
0
62
40
7
15
37
1.75
21172--21205
16
2.1
16
94
0
59
35
0
26
38
1.57
22976--23058
29
2.8
29
88
1
130
40
12
15
31
1.84
24699--24732
17
2.1
16
88
5
50
76
0
8
14
1.01
25207--25256
24
2.1
24
85
7
66
58
12
2
28
1.45
29442--29524
29
2.8
29
92
1
139
42
12
14
31
1.82
29819--29852
6
5.5
6
93
6
59
47
0
0
52
1.00
29817--29852
12
2.8
13
91
8
65
47
0
0
52
1.00
29835--29888
22
2.4
21
78
9
54
37
5
5
51
1.49
36098--36130
2
16.5
2
100
0
66
48
0
0
51
1.00
37479--37517
18
2.1
19
90
4
62
64
10
5
20
1.44
37927--37974
22
2.2
22
85
3
62
27
4
14
54
1.59
37927--37979
21
2.5
22
81
6
65
24
5
13
56
1.58
40236--40318
29
2.8
29
92
1
139
43
9
14
32
1.78
43685--43714
15
2.0
15
93
0
51
20
0
23
56
1.42
44871--44953
29
2.8
29
92
1
139
43
9
14
32
1.78
52450--52508
23
2.6
23
94
0
100
32
33
13
20
1.91
54141--54186
2
23.0
2
100
0
92
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61364--61463
48
2.0
49
81
11
116
43
12
9
36
1.73
61459--61483
13
1.9
13
100
0
50
80
0
0
20
0.72
62393--62422
3
10.0
3
92
0
51
66
30
0
3
1.07
64305--64381
37
2.1
36
83
9
93
46
1
3
48
1.28
68026--68074
23
2.2
23
89
7
75
40
22
0
36
1.54
68026--68081
23
2.5
22
82
5
69
41
19
0
39
1.52
72096--72201
53
2.0
53
100
0
212
30
20
24
24
1.99
72346--72408
30
2.1
29
88
8
92
49
11
12
26
1.74

Tables:   1

The End!