genome.fa.s375.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000375.1 Hibiscus syriacus cultivar Beakdansim tig00000686_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54333

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1966--2019	21	2.6	21	76	5	65	20	24	18	37	1.94
2008--2101	21	4.7	19	73	8	71	38	20	20	21	1.94
2047--2107	20	3.0	20	72	13	70	36	24	18	21	1.95
2113--2172	20	3.0	20	95	0	102	25	26	20	28	1.99
2717--2790	20	3.8	20	92	1	123	39	22	22	14	1.91
2830--2881	19	2.7	19	96	0	95	15	19	17	48	1.82
4905--4982	19	4.4	19	76	15	94	48	20	17	12	1.80
4940--4998	14	3.9	14	76	20	64	49	23	16	10	1.77
4921--5003	33	2.5	33	96	0	148	50	21	16	10	1.76
4921--5014	33	2.8	33	91	3	127	50	23	15	10	1.76
5010--5068	19	3.4	19	71	22	65	11	20	20	47	1.81
5623--5669	18	2.7	18	90	3	78	14	12	44	27	1.82
7299--7342	22	2.0	22	100	0	88	18	13	45	22	1.84
7549--7626	41	1.9	41	91	0	129	20	17	24	37	1.94
7529--7623	20	4.7	20	80	7	102	22	18	25	33	1.97
7549--7644	41	2.3	41	85	3	122	19	20	23	35	1.96
7653--7705	21	2.5	22	81	6	74	33	18	26	20	1.96
8032--8076	24	1.9	23	86	4	63	60	6	4	28	1.42
8492--8590	50	2.0	50	95	0	180	43	17	13	26	1.85
10734--10773	2	20.0	2	94	0	71	47	0	0	52	1.00
23730--23848	60	2.0	60	81	3	141	26	21	23	28	1.99
29196--29505	55	5.6	55	86	3	410	32	19	17	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29199--29505	165	1.9	165	90	1	490	33	19	17	29	1.95
37929--38036	35	3.2	34	71	12	105	35	27	14	22	1.93
37863--38037	67	2.5	68	86	7	228	34	25	15	24	1.94
37918--38024	32	3.2	32	71	12	99	35	26	16	21	1.95
38620--38958	18	19.3	18	70	19	145	36	1	5	56	1.33
38737--38975	2	128.5	2	69	21	119	38	2	4	55	1.31
38729--38976	83	2.8	90	73	18	236	37	2	4	55	1.31
38737--38983	85	2.9	85	79	13	267	38	2	4	55	1.32
38628--38963	107	3.1	105	78	13	285	36	1	5	55	1.34
38621--38973	56	6.3	57	71	20	150	37	1	5	55	1.35
38835--38964	29	4.9	25	76	15	111	40	2	2	55	1.25
38920--38977	25	2.3	25	82	11	66	37	3	0	58	1.15
38737--38984	57	4.3	58	71	19	157	37	2	4	55	1.32
43527--43592	33	2.0	33	100	0	132	33	15	21	30	1.94
46954--47045	22	4.2	22	83	6	98	36	26	10	26	1.89
49475--49592	7	15.4	7	73	21	62	76	5	0	16	1.03
49523--49597	13	5.9	13	81	17	79	77	6	1	14	1.04
49491--49595	22	4.4	24	73	18	78	78	5	0	15	0.99
49479--49595	13	9.2	12	73	18	78	76	5	0	16	1.02
49849--49968	6	19.5	6	67	14	50	73	2	5	19	1.13
49888--49968	22	3.7	22	78	12	69	76	1	3	18	1.00
49903--49968	23	3.0	22	86	8	89	78	1	3	16	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49886--49966	17	4.8	17	69	15	53	76	1	3	18	1.00
49990--50053	14	4.6	14	78	5	67	78	6	4	10	1.08
50009--50061	27	1.9	28	92	3	90	77	3	3	15	1.06
50903--51005	6	17.7	6	71	17	58	79	10	1	7	1.00
50922--51005	10	7.9	11	70	20	56	79	10	0	9	0.93
50927--51034	19	5.9	19	67	17	59	75	12	0	12	1.11
50904--50984	42	1.9	42	83	14	105	76	11	2	9	1.11
50955--51004	5	10.4	5	79	14	52	82	12	0	6	0.85
50946--50999	23	2.4	22	82	14	65	79	12	0	7	0.92
50910--51005	30	3.3	29	79	12	83	79	10	2	8	1.02
50955--51004	9	5.2	9	83	7	55	82	12	0	6	0.85
51703--51740	20	1.9	20	88	0	58	31	7	18	42	1.79
52086--52116	7	4.3	7	95	4	53	32	12	0	54	1.38
52113--52151	2	20.0	2	89	5	62	46	0	0	53	1.00
52188--52294	7	16.0	7	69	24	54	38	4	4	52	1.43
52191--52304	46	2.5	46	85	7	135	38	5	5	50	1.47
52352--52421	32	2.2	32	85	10	90	37	7	7	48	1.58
52386--52440	19	2.9	18	84	10	58	41	3	7	47	1.49
52411--52491	2	42.0	2	72	11	62	50	2	1	45	1.22
52424--52481	26	2.3	26	85	11	84	55	1	0	43	1.10
52435--52500	27	2.5	26	85	7	80	56	4	0	39	1.20
52418--52478	32	1.9	32	86	6	88	54	1	1	42	1.20

Tables:   1

The End!