Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003812.1 Hibiscus syriacus cultivar Beakdansim tig00008171_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67797

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11400--11619
37
5.7
36
84
11
255
45
1
7
45
1.40
11582--11635
24
2.2
26
90
6
85
40
1
7
50
1.41
12270--12306
18
2.1
18
89
0
56
10
18
10
59
1.59
12276--12314
18
2.2
18
85
0
51
7
17
10
64
1.48
13578--13610
17
1.9
17
100
0
66
69
0
6
24
1.10
14751--14789
15
2.7
15
96
4
71
25
5
28
41
1.77
15700--15729
2
15.0
2
100
0
60
50
0
0
50
1.00
16119--16226
53
2.0
53
96
0
198
25
17
20
36
1.94
17785--17849
33
2.0
32
88
8
96
47
7
16
27
1.74
18235--18266
11
2.9
11
95
0
55
68
0
6
25
1.12
18348--18386
18
2.1
19
85
4
53
71
7
2
17
1.21
18757--19233
239
2.0
238
88
2
699
20
25
20
32
1.97
34518--34543
13
2.0
13
100
0
52
23
30
7
38
1.83
34782--34814
15
2.2
15
94
0
57
51
6
3
39
1.42
35655--35901
90
2.7
90
96
0
440
33
19
19
27
1.96
35900--36007
54
2.0
55
92
1
182
26
29
15
27
1.96
35948--36394
43
9.6
43
71
20
285
30
27
12
29
1.93
36000--36300
55
5.9
54
71
21
256
31
25
12
30
1.92
35907--36394
98
5.1
98
87
6
557
29
27
13
29
1.94
36436--36464
15
1.9
15
100
0
58
44
27
6
20
1.77
36451--36674
36
6.0
36
84
5
223
37
14
20
27
1.91
36444--36718
72
3.6
73
79
6
257
39
14
18
26
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36549--36781
80
3.0
78
80
7
224
41
13
16
28
1.86
36651--36781
40
3.3
40
86
0
172
45
10
14
29
1.78
38826--38899
13
5.5
13
73
19
55
67
5
2
24
1.25
38826--38886
7
8.9
7
73
22
58
68
3
3
24
1.19
38826--38886
20
3.0
20
73
26
56
68
3
3
24
1.19
38821--38881
27
2.3
26
86
13
81
68
3
3
24
1.19
40677--40716
2
20.0
2
100
0
80
50
0
0
50
1.00
48438--48466
7
4.1
7
100
0
58
17
13
0
68
1.20
51992--52047
11
5.2
10
77
16
51
82
1
8
7
0.92
51995--52054
8
7.5
8
77
5
59
81
1
8
8
0.93
53068--53234
92
1.9
90
91
5
275
38
13
22
24
1.91
54197--54269
38
1.9
37
83
2
92
26
6
2
64
1.32
54295--54389
35
2.7
36
81
10
92
26
6
1
66
1.22
55489--55523
2
17.5
2
100
0
70
48
0
0
51
1.00
66054--66106
21
2.5
21
87
0
79
20
24
18
35
1.95
66096--66248
20
7.7
20
94
0
261
39
20
19
20
1.92
66235--66341
20
5.3
20
85
0
142
29
24
18
27
1.98
67169--67222
24
2.2
24
93
0
90
20
18
20
40
1.91

Tables:   1

The End!