Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003814.1 Hibiscus syriacus cultivar Beakdansim tig00008176_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100971

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5579--5631
15
3.3
16
84
7
72
13
28
32
26
1.93
5577--5641
32
2.1
31
85
8
87
13
29
29
27
1.95
6988--7033
22
2.0
23
91
4
76
39
8
32
19
1.82
7495--7526
17
1.9
17
93
6
57
40
0
12
46
1.42
17726--17758
14
2.4
14
94
0
57
33
6
30
30
1.82
29511--29543
9
3.8
9
88
8
50
87
0
3
9
0.63
30407--30827
121
3.5
122
88
1
580
32
18
20
28
1.96
35531--35567
2
18.5
2
100
0
74
48
0
0
51
1.00
36179--36228
25
2.0
25
84
4
64
46
2
12
40
1.52
37685--37745
6
10.2
6
96
0
95
29
49
16
4
1.66
37743--37791
5
9.8
5
93
0
62
16
36
40
6
1.73
43649--43709
6
10.2
6
96
0
113
32
49
16
1
1.56
43707--43765
5
11.8
5
94
0
73
15
37
40
6
1.74
44963--45029
29
2.2
30
80
17
77
50
7
10
31
1.64
46497--46536
21
1.9
21
89
0
62
37
30
20
12
1.89
46764--47414
332
2.0
332
99
0
1293
32
16
24
25
1.96
54467--54516
26
1.9
26
83
0
64
2
2
26
70
1.09
55014--55112
2
49.5
2
100
0
198
49
0
0
50
1.00
70044--70088
16
2.9
15
84
15
65
31
0
2
66
1.04
71249--71292
5
8.8
5
100
0
88
38
0
0
61
0.96
74961--75017
24
2.4
24
82
5
62
40
19
14
26
1.89
79573--79651
22
3.5
22
76
10
88
32
21
18
26
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82202--82237
17
2.1
17
100
0
72
22
11
16
50
1.77
82197--82253
17
3.0
20
78
19
68
26
12
14
47
1.79
82475--82548
22
3.3
22
83
7
96
33
25
14
25
1.94
82473--82532
23
2.7
22
87
5
93
31
25
16
26
1.96
82478--82555
23
3.4
24
80
7
74
33
26
15
24
1.95
85308--85361
21
2.6
21
100
0
108
57
3
3
35
1.34
85514--85553
2
20.5
2
84
5
55
50
0
2
47
1.14
86749--86980
118
2.0
118
82
10
287
46
6
8
37
1.61
88508--88586
3
28.3
3
77
19
73
65
1
0
32
1.00
88513--88587
22
3.3
23
75
12
84
66
1
0
32
1.00
88508--88572
25
2.6
25
85
4
87
64
0
0
35
0.94
88513--88587
11
6.7
11
75
13
73
66
1
0
32
1.00
88508--88586
19
3.4
24
72
22
71
65
1
0
32
1.00
88513--88596
22
3.9
22
79
4
82
67
2
0
29
1.03
88840--89379
113
4.8
112
91
2
839
28
19
14
37
1.91
89409--89722
76
4.1
76
96
0
565
34
23
19
22
1.97
89723--90047
164
2.0
166
90
1
519
40
12
12
35
1.81
90561--90615
22
2.5
22
93
0
101
40
14
10
34
1.81
97477--97516
21
1.9
21
94
0
71
60
12
10
17
1.59
100277--100362
44
1.9
43
81
6
100
48
5
1
44
1.34
100360--100574
106
2.0
104
80
11
233
45
7
8
38
1.64

Tables:   1

The End!