Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003817.1 Hibiscus syriacus cultivar Beakdansim tig00008182_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64981

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11311--11884
276
2.1
276
92
0
950
34
11
14
39
1.82
11863--11906
2
22.5
2
95
4
81
50
0
0
50
1.00
17114--17186
2
37.0
2
97
2
139
50
0
0
49
1.00
17186--17257
2
36.5
2
97
2
137
0
0
50
50
1.00
17258--17304
2
23.5
2
100
0
94
48
0
0
51
1.00
17304--17344
2
20.5
2
100
0
82
0
0
48
51
1.00
18446--18493
5
9.8
5
84
13
64
16
2
2
79
0.93
18456--18520
25
2.7
25
79
11
73
15
6
3
75
1.12
18447--18532
10
7.2
12
72
26
51
18
4
2
74
1.10
18641--18670
13
2.3
13
94
0
51
30
0
0
70
0.88
22444--22699
95
2.7
95
88
3
361
32
16
19
31
1.94
23834--24748
80
11.3
80
87
2
1154
33
23
19
23
1.97
23834--24752
237
3.8
241
86
3
1143
33
23
19
23
1.97
23834--24719
317
2.7
319
87
3
1220
33
23
18
23
1.97
26043--26211
4
41.8
4
68
19
50
18
4
3
72
1.17
26073--26254
6
28.3
6
67
24
56
18
5
2
73
1.16
26096--26144
26
1.9
26
91
4
82
18
8
0
73
1.07
26103--26213
26
4.1
24
74
22
71
17
7
0
74
1.08
26187--26253
20
3.4
18
84
10
71
20
2
4
71
1.17
26365--26397
6
5.5
6
100
0
66
45
0
0
54
0.99
35281--35326
23
2.0
23
91
0
74
34
23
21
19
1.96
39185--39224
21
1.9
21
89
0
62
35
7
2
55
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47615--47651
5
7.8
5
85
11
51
56
0
0
43
0.99
47614--47650
18
2.1
18
94
0
65
56
0
0
43
0.99
47905--47941
5
7.8
5
85
11
51
56
0
0
43
0.99
47904--47940
18
2.1
18
94
0
65
56
0
0
43
0.99
48412--48662
126
2.0
123
85
5
335
34
15
12
37
1.86
49125--49158
16
2.0
18
88
11
54
64
5
2
26
1.30
49994--50077
18
4.7
18
71
14
68
55
1
1
41
1.15
50001--50067
20
3.5
19
78
15
66
58
0
1
40
1.07
49960--50074
16
7.0
16
70
23
55
52
1
1
44
1.21
55337--55397
23
2.7
23
92
0
104
29
27
26
16
1.97
60309--60365
22
2.5
23
85
5
80
29
24
24
21
1.99
61797--61845
20
2.5
20
100
0
98
24
24
22
28
1.99
61797--61853
20
2.8
20
94
0
87
24
24
21
29
1.99

Tables:   1

The End!