genome.fa.s3823.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003823.1 Hibiscus syriacus cultivar Beakdansim tig00008198_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  191471

Tables:   1   2   

This is table  1  of  2  ( 140 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
275--304	14	2.1	14	93	0	51	36	3	0	60	1.14
1140--1169	16	1.9	16	93	6	53	80	3	3	13	0.97
1233--1275	18	2.4	18	92	0	68	72	0	6	20	1.08
7594--7646	2	26.5	2	100	0	106	49	0	0	50	1.00
7960--7984	11	2.3	11	100	0	50	24	0	0	76	0.80
11623--11662	17	2.3	17	91	4	62	42	20	0	37	1.52
11889--11938	3	16.7	3	100	0	100	68	0	0	32	0.90
12031--12076	13	3.6	13	80	8	51	58	4	6	30	1.43
12325--12364	17	2.3	17	91	4	62	42	20	2	35	1.65
12587--12617	3	10.7	3	93	6	55	67	0	0	32	0.91
12591--12617	14	1.9	14	100	0	54	66	0	0	33	0.92
12708--12753	13	3.6	13	80	8	51	58	4	6	30	1.43
15171--15221	20	2.6	19	76	11	59	50	1	3	43	1.31
36203--36231	8	3.8	8	90	9	51	10	10	0	79	0.94
46003--46036	16	2.1	16	100	0	68	17	29	32	20	1.96
47693--47725	16	2.1	16	100	0	66	36	12	27	24	1.91
48293--48389	47	2.0	48	84	6	124	47	9	9	34	1.68
48450--48499	21	2.4	21	100	0	100	50	4	0	46	1.20
48450--48509	21	2.9	21	90	5	68	53	3	0	43	1.17
48720--48943	112	2.0	112	88	1	333	35	13	12	38	1.82
58409--58489	2	43.0	2	70	20	50	51	2	3	41	1.32
58428--58482	27	2.0	28	85	3	76	50	1	5	41	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58765--58790	2	13.0	2	100	0	52	50	0	50	0	1.00
59455--59619	79	2.1	79	100	0	330	12	20	28	38	1.88
61654--61775	33	3.4	37	82	13	155	39	36	11	12	1.79
63188--63244	3	19.0	3	100	0	114	33	0	0	66	0.92
63933--63994	29	2.1	29	90	0	97	20	29	30	19	1.97
64594--64637	21	2.1	21	91	0	70	29	0	15	54	1.42
65038--65064	14	1.9	14	100	0	54	7	3	14	74	1.18
65121--65158	17	2.2	17	86	9	51	42	0	10	47	1.38
68276--68386	21	4.9	21	69	21	64	42	0	9	46	1.43
68260--68375	49	2.4	49	90	8	177	42	0	12	45	1.41
68289--68355	28	2.3	29	72	10	66	41	0	10	47	1.38
68460--68586	59	2.2	57	84	11	159	41	2	7	48	1.45
68478--68538	14	4.7	14	76	17	60	42	1	6	49	1.38
70865--70914	22	2.2	23	92	3	84	40	12	0	48	1.40
70887--70952	30	2.2	31	88	2	98	48	12	0	39	1.40
70887--70962	31	2.5	31	84	4	73	48	10	0	40	1.38
71007--71120	41	2.9	37	75	18	106	45	13	1	39	1.53
71130--71169	21	1.9	21	100	0	80	57	15	0	27	1.38
71198--71249	21	2.7	19	82	11	63	55	5	0	38	1.24
71198--71240	21	2.0	21	95	0	77	55	6	0	37	1.27
71198--71300	35	2.8	35	78	8	91	52	7	0	39	1.30
71356--71415	28	2.2	29	82	11	81	46	15	1	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70910--71546	341	1.8	347	83	7	844	47	12	1	38	1.50
71476--71529	21	2.6	19	81	18	63	59	14	0	25	1.36
71503--71587	39	2.2	39	95	0	152	42	15	2	40	1.60
71514--71611	39	2.5	37	82	9	124	44	14	2	38	1.56
71604--71641	9	4.2	9	83	10	51	65	2	0	31	1.06
71815--71850	11	3.2	11	84	7	54	38	19	22	19	1.93
72054--72113	29	2.1	29	96	0	111	25	36	23	15	1.93
72452--72653	72	2.8	72	83	5	226	22	35	16	25	1.95
72662--72817	60	2.6	60	94	0	267	18	35	19	26	1.95
72753--72848	45	2.1	45	78	3	104	20	38	16	23	1.93
72768--72853	45	1.9	45	85	4	120	19	39	17	23	1.92
73182--73250	2	34.5	2	100	0	138	49	0	0	50	1.00
73933--73996	34	1.9	33	84	6	85	56	1	7	34	1.38
73944--74019	40	1.9	38	86	5	107	59	3	3	32	1.34
78677--78718	16	2.7	15	82	10	57	45	11	4	38	1.62
78777--78849	37	2.0	37	83	5	94	43	5	6	43	1.54
78852--79029	39	4.5	39	73	18	154	41	9	4	44	1.57
78852--79082	79	2.9	78	74	14	213	41	9	4	43	1.57
78852--79083	39	5.8	39	72	15	138	42	9	4	43	1.57
78715--79109	40	9.8	41	68	20	151	43	9	4	43	1.56
82272--82314	23	2.0	22	82	13	54	34	0	9	55	1.32
83383--83415	16	2.1	16	100	0	66	57	24	12	6	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83481--83555	10	7.7	10	69	21	61	57	21	12	9	1.62
83485--83549	16	4.1	16	95	0	121	56	23	12	7	1.61
84300--84355	14	4.3	14	76	17	66	53	23	12	10	1.69
84293--84354	24	2.6	24	89	0	97	54	22	11	11	1.67
86842--86879	20	1.9	20	84	10	51	65	5	2	26	1.27
87422--87703	146	1.9	146	89	2	442	35	9	17	37	1.82
88625--88685	13	4.6	14	71	20	51	45	0	3	50	1.17
88626--88674	24	2.0	25	88	11	75	44	0	2	53	1.12
88678--88779	2	52.5	2	78	16	90	45	0	4	50	1.23
88643--88794	71	2.2	68	84	9	198	42	0	6	50	1.28
95626--96032	102	4.0	102	89	1	606	27	18	24	29	1.98
103051--104352	654	2.0	650	96	0	2372	36	14	13	35	1.86
109987--110030	18	2.4	18	88	0	70	22	47	18	11	1.80
115598--115870	43	6.4	43	92	0	440	16	26	25	31	1.97
118348--118397	22	2.3	21	83	16	59	34	22	20	24	1.97
120663--120702	21	1.9	21	100	0	80	30	12	7	50	1.68
120699--120798	33	3.0	33	91	0	146	31	6	15	48	1.69
121388--121431	20	2.3	19	92	7	72	59	4	13	22	1.53
121581--121655	38	2.0	37	84	5	98	48	2	1	48	1.24
122928--122980	3	18.0	3	96	3	99	32	0	0	67	0.91
124741--125010	136	2.0	138	86	2	384	31	14	12	40	1.84
128418--128654	125	1.9	125	92	0	402	39	11	23	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128554--128988	105	4.0	105	81	11	521	39	11	22	25	1.88
128354--128984	230	2.7	230	91	0	1023	39	11	23	25	1.88
128659--128885	125	1.8	125	94	0	400	40	11	23	24	1.87
133167--133218	23	2.3	23	93	0	86	34	17	17	30	1.93
133559--133679	57	2.1	58	81	3	138	33	13	15	38	1.86
133687--133834	54	2.7	53	87	5	190	31	8	18	41	1.81
133791--133868	35	2.2	35	90	2	129	37	8	14	39	1.77
133686--133977	143	2.0	144	88	3	428	31	9	17	40	1.82
133742--133923	89	2.0	89	91	0	292	32	9	17	40	1.82
133833--134046	54	4.0	54	88	0	293	31	9	17	41	1.82
133833--134046	108	2.0	108	89	1	331	31	9	17	41	1.82
134760--134797	18	2.1	18	85	9	51	34	23	15	26	1.95
134964--135035	37	1.9	37	82	0	90	20	13	19	45	1.84
135318--135471	42	3.7	42	80	4	161	31	24	17	26	1.97
136395--136463	35	2.0	35	82	5	86	39	14	7	39	1.74
136418--136463	18	2.6	17	76	6	56	41	13	4	41	1.63
138935--138988	21	2.8	19	80	8	65	59	1	25	12	1.44
140110--140179	35	2.0	35	83	5	88	37	14	10	38	1.79
140110--140179	18	4.0	17	76	9	70	37	14	10	38	1.79
140589--140641	24	2.2	24	83	6	63	37	18	15	28	1.91
143450--143737	137	2.1	138	83	2	366	31	14	12	42	1.82
147952--147992	21	2.0	21	90	0	64	31	2	14	51	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154677--154904	113	2.0	113	98	0	438	39	5	20	35	1.75
155948--156248	54	5.6	54	87	0	413	28	19	19	32	1.96
156605--156870	46	5.8	46	85	1	311	45	8	23	23	1.79
156607--156871	138	1.9	137	84	2	352	45	8	23	23	1.79
156845--157002	45	3.5	45	75	7	133	41	10	20	28	1.84
160753--160796	22	2.0	22	90	0	70	27	13	27	31	1.94
160762--160806	22	2.1	21	84	8	56	31	15	22	31	1.95
161125--161462	54	6.3	54	84	0	444	28	19	20	31	1.97
161450--161555	55	1.9	55	83	7	135	33	19	18	27	1.96
161897--162109	46	4.6	46	89	0	291	46	7	23	22	1.78

Tables:   1   2