Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003823.1 Hibiscus syriacus cultivar Beakdansim tig00008198_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  191471

Tables:   1   2   

This is table  2  of  2  ( 140 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
165686--166035
177
2.0
175
93
1
592
30
10
12
46
1.75
167675--167723
20
2.6
19
80
6
64
28
16
26
28
1.97
169120--169221
51
2.0
51
96
0
186
26
26
8
38
1.85
169349--169624
41
6.7
42
69
14
171
31
16
18
33
1.93
169362--169591
82
2.8
81
77
6
239
30
17
18
32
1.95
169528--169719
41
4.7
41
80
4
176
30
18
18
32
1.95
169557--169718
82
2.0
83
85
6
222
29
18
17
33
1.94
171967--172344
42
9.0
42
78
9
371
24
24
19
32
1.98
172058--172130
38
1.9
38
85
0
101
20
23
21
34
1.97
171973--172215
123
2.0
122
85
6
330
23
24
19
33
1.97
171970--172342
85
4.4
86
81
7
392
24
24
19
31
1.98
179627--179651
2
12.5
2
100
0
50
48
0
0
52
1.00
185042--185179
43
3.2
43
93
0
222
15
16
34
34
1.90
187344--187426
30
2.7
31
78
14
93
57
12
14
15
1.65
187380--187484
30
3.5
29
74
10
86
55
11
13
20
1.68
188891--188927
3
12.7
3
94
5
67
67
0
0
32
0.91
189466--189562
28
3.4
28
84
12
117
44
13
16
25
1.84
189513--189738
65
3.5
65
78
8
189
39
13
20
26
1.89
190848--190879
14
2.2
15
94
5
57
21
3
28
46
1.66
190989--191030
22
2.0
21
86
9
59
21
30
11
35
1.90

Tables:   1   2

The End!