genome.fa.s3831.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003831.1 Hibiscus syriacus cultivar Beakdansim tig00008213_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75810

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6893--7012	42	2.9	42	93	0	204	18	20	16	44	1.87
7276--7369	29	3.3	27	75	21	84	44	1	2	52	1.20
7283--7368	28	2.9	29	80	13	88	44	1	2	52	1.21
7536--7592	19	2.9	19	94	2	96	38	12	10	38	1.77
7531--7599	20	3.5	20	92	4	122	36	14	10	39	1.80
7582--7663	30	2.8	30	90	1	121	35	17	7	40	1.77
7582--7668	45	2.0	44	93	2	147	33	17	6	42	1.76
7582--7663	15	5.5	15	83	2	103	35	17	7	40	1.77
7826--7865	18	2.3	18	91	4	64	47	7	0	45	1.31
8152--8211	32	1.9	31	86	3	84	56	5	0	38	1.21
8158--8210	15	3.2	18	74	20	60	56	3	0	39	1.17
15176--15246	35	2.0	35	97	0	133	46	15	5	32	1.69
19331--19434	3	34.3	3	84	5	138	34	0	0	64	1.00
20443--20486	15	3.1	14	87	9	54	25	0	4	70	1.06
20462--20486	3	8.3	3	100	0	50	32	0	0	68	0.90
22953--23035	3	28.0	3	71	11	55	39	0	2	57	1.12
22946--22991	17	2.7	17	86	0	65	52	0	0	47	1.00
23030--23115	41	2.1	41	97	0	163	32	27	10	29	1.90
25805--25839	17	2.1	17	100	0	70	45	5	37	11	1.64
28050--28095	18	2.6	18	100	0	92	13	26	28	32	1.93
29581--29657	31	2.5	31	91	4	120	35	2	12	49	1.55
31672--31914	135	1.8	135	87	0	369	37	13	19	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36173--36236	19	3.5	19	87	8	89	35	26	15	21	1.94
41821--41876	27	2.1	27	96	0	103	35	17	5	41	1.73
44106--44139	2	17.0	2	100	0	68	50	0	0	50	1.00
44377--44401	3	8.3	3	100	0	50	36	0	0	64	0.94
46801--46903	19	5.2	19	76	17	84	34	3	28	33	1.75
46946--47124	65	2.8	65	99	0	349	37	11	20	30	1.89
47381--47511	21	6.4	21	73	7	117	34	22	20	22	1.97
47373--47469	19	4.9	19	70	7	77	37	19	20	22	1.95
47373--47490	40	3.0	40	91	0	191	35	21	20	22	1.96
47373--47543	80	2.2	76	84	7	209	35	19	20	24	1.95
47374--47522	40	3.7	39	85	3	156	34	20	20	23	1.96
47530--47571	21	2.0	21	85	0	57	23	14	21	40	1.90
47559--47691	20	6.6	20	75	11	128	23	18	26	31	1.97
47579--47691	40	2.8	41	89	4	167	22	18	26	32	1.97
48058--48087	2	15.0	2	92	0	51	50	3	0	46	1.18
48776--48803	4	7.0	4	100	0	56	25	0	0	75	0.81
50961--51142	41	4.4	41	84	4	224	29	20	14	34	1.93
50960--51176	82	2.6	81	80	7	249	32	20	14	32	1.92
50960--51176	41	5.3	41	80	5	181	32	20	14	32	1.92
50960--51182	123	1.8	124	82	6	292	32	20	14	33	1.92
62379--62408	7	4.4	7	91	8	53	16	30	26	26	1.97
62380--62405	13	2.0	13	100	0	52	15	30	23	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66319--66387	24	3.0	24	76	17	67	31	17	26	24	1.97
70046--70072	13	2.1	13	100	0	54	70	0	29	0	0.88
70526--70596	21	3.4	21	90	0	106	21	5	21	52	1.67
74698--74730	16	2.0	17	88	5	50	15	24	18	42	1.88

Tables:   1

The End!