Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003849.1 Hibiscus syriacus cultivar Beakdansim tig00008261_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89469

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9022--9072
23
2.3
23
86
3
68
49
11
7
31
1.68
10795--10828
17
2.0
17
88
0
50
23
0
2
73
0.97
16269--16317
26
1.9
26
83
4
64
38
6
4
51
1.46
16343--16378
14
2.5
14
95
4
63
52
0
0
47
1.00
16784--16824
19
2.1
20
90
4
66
51
4
4
39
1.45
20343--20427
35
2.4
35
94
0
152
32
28
9
29
1.88
35418--35485
23
3.0
22
87
6
100
23
22
26
27
1.99
37760--37822
3
20.7
3
74
9
56
31
3
3
61
1.27
38625--38670
21
2.2
21
84
0
56
50
0
41
8
1.33
43041--43083
10
4.3
10
91
5
61
88
0
2
9
0.60
43041--43083
9
4.8
9
85
8
61
88
0
2
9
0.60
43041--43083
17
2.5
17
88
11
61
88
0
2
9
0.60
44113--44182
34
2.1
33
86
7
97
37
14
21
27
1.92
44671--44731
31
1.9
31
83
9
79
29
16
14
39
1.88
44592--44818
99
2.3
97
80
13
227
28
17
14
39
1.89
44856--44981
63
2.0
63
82
6
155
25
13
15
46
1.82
45178--45250
29
2.5
29
88
2
101
24
16
13
45
1.84
45361--45605
134
1.8
132
80
4
296
26
28
18
26
1.98
45802--45854
3
17.7
3
80
7
63
30
0
1
67
1.01
63711--63771
23
2.7
23
97
0
113
29
26
26
18
1.98
68252--68300
5
9.4
5
86
8
71
4
22
53
20
1.63
68243--68290
22
2.2
22
92
0
78
12
22
45
18
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68298--68344
20
2.4
19
82
10
58
34
29
19
17
1.94
70205--70310
51
2.0
51
92
7
178
34
29
15
20
1.93
81417--81451
16
2.2
16
100
0
70
17
14
25
42
1.86
86591--86634
16
2.8
16
89
0
70
56
25
11
6
1.58
86789--86817
12
2.4
12
100
0
58
17
27
24
31
1.97

Tables:   1

The End!