genome.fa.s3850.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003850.1 Hibiscus syriacus cultivar Beakdansim tig00008262_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  524162

Tables:   1   2   3   

This is table  2  of  3  ( 241 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307526--307845	52	6.0	52	93	4	550	46	16	21	14	1.83
307852--307952	19	5.6	19	85	12	142	14	23	17	43	1.87
308059--308095	14	2.6	14	91	0	65	45	21	0	32	1.52
308090--308162	12	6.0	12	67	20	53	57	16	1	24	1.47
308076--308148	38	1.9	38	97	0	137	53	16	1	28	1.51
309965--310010	20	2.4	19	88	3	65	45	30	13	10	1.77
309965--310080	19	6.6	18	72	21	77	45	25	18	10	1.81
310002--310058	14	3.7	14	77	20	60	45	24	21	8	1.80
309983--310075	33	2.8	33	95	0	159	47	24	19	8	1.77
310076--310204	19	7.3	19	75	17	125	8	17	28	45	1.77
310076--310167	33	2.8	33	93	3	150	7	18	28	45	1.76
310248--310624	91	4.1	93	96	2	717	46	18	12	22	1.83
312328--312417	14	5.7	14	74	23	81	42	23	25	8	1.83
312320--312434	33	3.5	33	95	0	212	45	20	24	9	1.81
312327--312439	19	6.8	18	72	23	88	43	22	24	9	1.83
312451--312505	14	3.6	14	73	21	56	9	27	23	40	1.85
312625--312695	33	2.2	33	92	0	115	47	18	22	11	1.80
312877--312931	22	2.5	22	81	0	74	20	16	40	23	1.91
313077--313270	20	9.6	20	82	5	221	19	19	25	35	1.95
313077--313270	60	3.2	60	83	0	253	19	19	25	35	1.95
313263--313339	21	3.7	20	70	13	57	27	16	23	32	1.96
313325--313376	20	2.6	20	96	0	95	21	13	26	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
313544--313626	3	27.7	3	100	0	166	67	0	0	32	0.91
314532--314566	3	11.7	3	100	0	70	65	0	0	34	0.93
315618--315710	18	5.2	18	67	14	75	3	15	52	29	1.58
315612--315718	36	3.0	35	91	2	169	4	14	53	28	1.60
317785--317834	23	2.2	23	88	0	73	36	8	24	32	1.84
317748--317910	87	1.9	87	93	0	281	41	12	14	31	1.83
319604--319659	21	2.7	21	97	0	103	26	19	8	44	1.80
319625--320315	204	3.5	200	81	8	782	31	13	16	38	1.87
321925--321968	3	14.7	3	80	0	52	25	31	2	40	1.68
323102--323152	15	3.5	15	89	5	77	33	0	49	17	1.47
323618--324782	198	5.9	198	93	0	1931	31	15	15	37	1.89
325106--325150	16	2.8	17	90	6	67	62	11	0	26	1.29
329164--329210	20	2.3	20	78	7	60	14	21	14	48	1.80
329140--329785	182	3.6	182	84	5	785	26	16	13	43	1.86
330568--330600	16	2.1	16	100	0	66	36	24	12	27	1.91
331066--331269	101	2.0	101	99	0	399	42	5	20	31	1.75
331767--331834	25	2.8	25	97	2	129	48	13	4	33	1.62
333444--333515	3	24.0	3	77	13	51	41	0	1	56	1.07
334276--334309	18	1.9	18	88	5	52	17	26	44	11	1.83
337133--337214	43	1.9	42	90	2	128	31	9	23	35	1.87
340635--340695	32	1.9	32	90	3	97	42	19	18	19	1.89
345259--345452	45	4.3	45	92	0	298	26	20	19	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345470--345898	45	9.5	45	89	4	614	24	23	18	33	1.96
345470--346270	135	6.0	135	86	6	1120	24	22	18	34	1.96
345830--345972	76	1.9	74	88	2	214	25	20	19	34	1.96
345906--346270	45	8.1	45	92	0	559	24	22	18	34	1.96
345264--346257	436	2.3	436	94	0	1740	24	22	18	34	1.96
346454--346501	3	16.3	3	79	12	55	39	0	0	60	0.97
346446--346512	16	4.1	17	75	14	61	43	0	0	56	0.99
346896--346938	21	2.0	22	86	9	61	34	9	2	53	1.46
350432--350466	16	2.2	16	94	0	61	8	31	25	34	1.86
362689--362856	81	2.1	81	95	0	300	26	17	23	31	1.97
363872--363978	53	2.0	53	94	0	187	47	7	22	22	1.76
368027--368133	53	2.0	53	96	0	196	48	7	22	21	1.75
369060--369102	15	2.9	14	83	10	50	79	11	6	2	1.02
369502--369531	2	15.0	2	100	0	60	50	0	0	50	1.00
373055--373104	26	2.0	24	85	14	66	32	0	2	66	1.03
373064--373120	24	2.4	22	74	25	53	28	3	3	64	1.26
374372--374415	23	1.9	23	86	9	63	59	15	9	15	1.61
380264--380289	12	2.2	12	100	0	52	0	38	0	61	0.96
382000--382074	26	2.9	27	78	9	75	26	1	2	69	1.10
390671--390704	10	3.3	10	84	8	50	35	8	17	38	1.81
391204--391264	24	2.5	24	97	0	113	32	19	22	24	1.97
391973--392021	16	3.1	16	96	0	89	14	24	24	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
392067--392127	18	3.4	18	88	0	95	19	21	32	26	1.97
392067--392137	18	3.9	18	78	10	74	21	19	32	26	1.97
413871--413917	24	2.1	22	84	11	60	55	2	0	42	1.12
414645--414687	22	2.0	22	100	0	86	37	4	20	37	1.74
417237--417325	20	4.4	20	75	14	85	32	29	12	25	1.92
417318--417386	20	3.4	21	86	6	79	21	24	13	40	1.89
417337--417395	20	3.0	20	78	9	57	23	25	11	38	1.89
418382--418428	24	2.0	24	95	0	85	21	21	21	36	1.96
420692--420727	18	2.0	18	94	0	63	55	22	2	19	1.56
420979--421029	20	2.5	20	96	0	93	13	13	21	50	1.76
421358--421412	22	2.5	22	88	5	76	21	18	43	16	1.88
421603--421653	20	2.5	20	93	0	93	29	13	13	43	1.83
422207--422420	42	5.2	42	75	5	143	24	17	21	36	1.94
422209--422420	41	5.2	41	76	5	171	25	16	21	36	1.94
422641--422690	14	3.6	14	88	0	73	26	44	18	12	1.84
424536--424768	96	2.4	97	97	0	432	33	14	20	32	1.92
428370--428398	15	1.9	15	100	0	58	37	0	6	55	1.27
428794--429019	123	1.8	124	85	3	321	38	8	7	45	1.65
429514--429580	27	2.5	27	82	2	82	29	5	0	64	1.17
441834--442513	113	6.0	113	91	3	994	37	14	18	29	1.90
442306--442527	121	1.8	120	89	2	347	40	14	17	28	1.88
444327--444352	3	8.7	3	100	0	52	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
450041--450077	18	2.1	18	90	10	58	16	29	27	27	1.97
468545--468809	139	1.9	138	98	0	512	44	23	14	17	1.85
473372--473426	22	2.5	22	82	5	67	41	20	14	23	1.89
476794--476847	22	2.5	22	90	0	90	48	12	11	27	1.76
479974--480011	19	2.0	19	85	10	51	44	0	5	50	1.24
480156--480220	28	2.3	28	100	0	130	32	18	32	16	1.94
491379--491529	60	2.5	60	91	2	232	37	13	11	37	1.82
491418--491514	31	3.2	31	66	16	76	32	14	14	38	1.86
491388--491483	29	3.2	29	65	16	79	39	13	10	36	1.79
493687--493740	20	2.7	20	100	0	108	24	22	29	24	1.99
495144--495178	18	1.9	18	88	0	52	22	22	31	22	1.98
495167--495246	21	3.8	21	82	12	94	35	22	16	26	1.95
495141--495281	21	7.0	21	75	14	93	29	21	24	24	1.99
495162--495262	42	2.4	42	80	3	123	31	21	21	24	1.98
495246--495280	18	1.9	18	94	0	61	20	22	34	22	1.97
502727--502776	24	2.1	24	85	7	66	60	14	2	24	1.45
503606--503632	7	3.9	7	100	0	54	14	0	29	55	1.40
503934--504027	21	4.5	21	79	10	84	30	17	22	29	1.96
504708--504748	21	1.9	22	95	5	75	29	17	29	24	1.97
507916--508033	55	2.2	55	93	1	202	35	3	0	60	1.20
508019--508061	22	2.0	22	95	0	77	41	16	0	41	1.48
511146--511204	3	19.0	3	83	13	75	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
515770--515812	12	3.3	12	79	17	50	16	20	13	48	1.80
515769--515805	12	2.7	14	80	19	51	13	21	13	51	1.75
517068--517124	29	2.0	29	82	6	71	70	5	24	0	1.08
518729--518869	36	3.9	35	75	10	124	31	19	9	39	1.84
518729--518869	71	2.0	72	81	6	171	31	19	9	39	1.84
519133--519314	63	2.8	63	87	5	242	32	9	14	42	1.78
519325--519510	29	6.2	29	83	8	187	29	15	14	40	1.86
519325--519599	29	9.2	28	75	14	180	29	14	13	42	1.84
519818--519877	29	2.0	30	93	3	104	21	13	15	50	1.78
520164--520239	40	1.9	39	81	7	91	19	38	18	23	1.93

Tables:   1   2   3