genome.fa.s3853.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003853.1 Hibiscus syriacus cultivar Beakdansim tig00008276_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  216820

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93--305	103	2.1	99	92	4	347	24	13	24	37	1.92
320--382	23	2.7	23	87	4	92	20	26	26	25	1.99
6429--6471	21	2.0	21	82	8	52	30	27	25	16	1.97
6499--6537	20	2.0	20	89	0	60	23	38	28	10	1.87
7007--7232	103	2.2	103	91	6	377	25	11	24	38	1.89
7241--7303	23	2.7	23	87	4	92	20	26	26	25	1.99
16999--17052	27	2.0	28	82	10	67	50	3	5	40	1.44
21554--21599	22	2.1	22	95	0	83	32	32	8	26	1.87
21790--21839	25	2.0	24	85	11	66	52	20	6	22	1.68
24235--24352	20	5.8	20	68	14	62	38	21	17	22	1.93
24298--24350	20	2.7	20	85	5	72	45	24	16	13	1.83
24378--24613	20	11.7	20	81	8	255	39	24	18	17	1.91
24359--24610	40	6.2	40	89	0	360	39	23	18	18	1.92
25158--25236	20	3.9	21	86	5	94	51	17	18	11	1.75
25218--25282	14	4.3	14	73	17	58	46	21	23	9	1.80
25213--25293	33	2.5	33	93	0	135	46	22	20	9	1.80
25318--25373	20	2.8	20	78	10	69	16	23	19	41	1.90
27055--27434	94	4.1	94	96	1	665	21	12	18	47	1.81
27537--27599	33	1.9	33	90	0	99	46	23	22	7	1.78
27649--27715	20	3.3	20	91	0	80	20	17	22	38	1.93
28199--28297	21	4.7	21	75	3	92	22	35	20	22	1.96
28196--28306	42	2.6	42	74	5	116	20	36	18	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29663--29698	14	2.6	14	90	0	54	30	0	22	47	1.52
29800--29895	33	2.9	34	90	3	140	41	20	22	14	1.89
29833--29900	19	3.8	19	72	21	74	45	19	22	13	1.84
29904--30134	19	12.8	19	69	21	158	15	22	18	44	1.86
30140--30213	20	3.7	20	85	7	114	17	20	24	37	1.93
30141--30217	40	1.9	41	97	2	147	18	20	22	38	1.93
30139--30223	20	4.2	20	82	8	111	16	21	24	37	1.93
33507--33570	20	3.3	20	66	24	55	25	17	26	31	1.97
33601--33833	20	11.6	20	79	7	231	18	19	24	36	1.94
33622--33833	41	5.2	41	91	1	338	18	18	24	37	1.94
33842--33894	20	2.7	20	82	5	63	16	18	20	43	1.88
33862--33959	21	4.7	21	67	15	60	22	20	19	37	1.94
42301--42336	2	18.0	2	100	0	72	50	0	0	50	1.00
46781--46810	13	2.3	13	94	0	51	40	3	0	56	1.16
51013--51047	16	2.2	16	94	0	61	42	22	5	28	1.76
60605--60633	2	14.5	2	100	0	58	48	0	0	51	1.00
71697--71743	15	3.1	15	84	3	58	65	2	0	31	1.04
77390--77416	2	13.5	2	100	0	54	51	0	0	48	1.00
86550--86606	21	2.7	21	88	0	87	22	36	17	22	1.94
86670--86724	21	2.7	20	88	2	74	21	23	21	32	1.98
86649--86742	20	4.7	20	82	2	80	21	26	20	31	1.98
88774--88832	18	3.2	19	76	7	68	40	1	3	54	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88897--88935	21	1.9	20	84	5	51	35	5	0	58	1.20
88957--88995	16	2.4	16	86	0	60	25	23	25	25	2.00
89041--89109	29	2.4	29	97	0	129	42	13	7	37	1.71
92157--92212	2	28.0	2	100	0	112	50	0	0	50	1.00
101975--102135	29	5.6	29	94	0	250	50	15	2	31	1.57
108226--108412	29	6.6	29	86	4	231	50	13	2	33	1.54
108223--108398	57	3.1	56	84	5	219	52	12	2	32	1.52
108223--108412	86	2.2	85	85	3	265	51	13	2	32	1.53
110653--110809	79	2.0	79	95	4	284	40	10	12	36	1.77
112020--112050	13	2.4	13	94	0	53	3	12	9	74	1.19
119628--119669	21	2.2	20	87	12	61	69	0	19	11	1.19
120678--120707	10	3.0	10	100	0	60	20	20	20	40	1.92
120999--121048	21	2.4	21	75	18	50	54	0	4	42	1.19
121509--121731	105	2.1	105	86	1	293	20	19	25	34	1.96
121680--122056	64	5.8	64	91	2	601	21	19	25	33	1.97
121680--122056	132	2.9	128	90	3	610	21	19	25	33	1.97
121697--122056	196	1.8	197	95	0	659	21	19	25	33	1.97
123090--123126	15	2.5	15	84	16	51	0	16	2	81	0.81
129062--129093	15	2.1	15	100	0	64	0	25	0	75	0.81
133708--133749	21	2.2	20	87	12	61	69	0	19	11	1.19
135041--135090	21	2.4	21	75	18	50	54	0	4	42	1.19
141191--141231	19	2.0	21	86	9	59	29	7	0	63	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151755--151781	1	27.0	1	100	0	54	100	0	0	0	0.00
152472--153561	105	10.4	105	94	0	1803	33	25	18	22	1.97
155113--155152	19	2.0	21	85	9	57	30	5	0	65	1.14
156209--156274	32	2.1	32	100	0	132	39	12	6	42	1.67
159484--159827	166	2.1	165	85	2	449	31	18	18	31	1.95
161966--161999	15	2.2	16	89	5	52	76	14	0	8	1.01
162356--162399	23	1.9	24	90	9	74	43	9	0	47	1.35
164982--165018	2	18.5	2	100	0	74	48	0	0	51	1.00
165684--165792	35	3.2	34	81	12	100	33	0	3	62	1.13
165684--165763	33	2.5	32	84	10	92	31	0	5	63	1.15
168036--168075	13	3.2	13	89	7	64	45	0	0	55	0.99
171050--171099	24	2.1	24	84	0	64	18	4	14	64	1.44
176105--176180	36	2.1	36	97	0	143	31	10	14	43	1.79
176604--176633	15	2.0	15	100	0	60	13	26	46	13	1.80
181144--181171	14	2.0	14	100	0	56	14	42	28	14	1.84
181594--181669	36	2.1	36	97	0	143	43	14	10	31	1.79
188458--188494	20	1.9	19	89	10	58	45	10	24	18	1.81
188645--188719	38	2.0	37	84	5	98	48	2	1	48	1.24
192222--192252	15	2.0	16	93	6	55	54	0	0	45	0.99
192222--192263	14	2.9	15	85	3	50	52	2	0	45	1.13
195794--195837	2	22.5	2	95	4	81	50	0	0	50	1.00
201023--201484	229	2.0	229	100	0	924	30	28	11	30	1.91

Tables:   1

The End!