genome.fa.s3854.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003854.1 Hibiscus syriacus cultivar Beakdansim tig00008285_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151844

Tables:   1   2   

This is table  2  of  2  ( 152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111858--111888	2	15.5	2	100	0	62	51	0	0	48	1.00
113095--113145	21	2.6	19	75	9	50	49	0	5	45	1.26
121137--121186	20	2.6	19	81	6	55	58	4	14	24	1.53
129575--129630	23	2.6	22	80	8	71	12	17	19	50	1.78
130163--130196	16	2.0	18	88	11	54	44	5	0	50	1.26
130232--130261	7	4.3	7	91	0	51	53	13	3	30	1.56
131901--131947	20	2.4	19	82	6	58	55	4	6	34	1.45
133609--133673	20	3.2	21	71	6	62	35	20	20	24	1.96
134910--134954	14	2.9	16	74	12	58	51	15	0	33	1.44
135325--135349	2	12.5	2	100	0	50	52	0	0	48	1.00
135710--135786	6	12.8	6	92	0	127	3	16	62	16	1.47
142241--142278	19	2.0	19	100	0	76	57	15	0	26	1.38
142243--142286	19	2.3	19	88	0	61	59	13	4	22	1.53
143118--143169	21	2.5	21	81	3	61	38	19	25	17	1.93
143158--143251	20	4.7	20	80	7	100	34	24	18	23	1.96
143824--143988	19	9.1	19	74	15	134	12	23	20	44	1.85
143829--143963	33	3.9	33	87	5	153	11	23	22	42	1.85
143876--143963	33	2.6	33	96	1	158	11	27	22	38	1.88
146133--146283	21	7.2	21	62	10	58	22	37	19	21	1.95
146106--146283	42	4.2	42	81	2	198	21	36	19	21	1.95
146078--146253	84	2.1	84	98	0	343	21	37	17	23	1.94
146078--146283	84	2.5	84	91	1	288	21	36	18	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147629--147664	14	2.6	14	95	0	63	30	0	25	44	1.54
147771--147823	19	2.8	19	94	0	97	45	18	20	15	1.85
147828--147976	19	8.7	19	63	23	71	15	22	20	41	1.90
147827--147956	33	4.1	31	87	7	197	15	22	20	42	1.89
147825--147955	66	2.0	64	95	2	235	16	22	19	41	1.90
150254--150278	12	2.1	12	100	0	50	0	28	0	72	0.86
150450--150503	24	2.2	24	90	0	81	40	20	16	22	1.91
151291--151418	33	3.8	33	84	1	157	46	17	22	14	1.83
151418--151532	33	3.5	34	83	5	137	12	19	22	46	1.83
151449--151508	19	3.4	18	69	21	56	13	18	18	50	1.78

Tables:   1   2

The End!