genome.fa.s3877.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003877.1 Hibiscus syriacus cultivar Beakdansim tig00008353_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72688

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24--2107	217	9.6	221	78	8	1916	31	17	17	33	1.93
2791--2874	42	2.1	41	81	12	104	39	0	3	57	1.16
4830--6712	224	8.5	222	80	6	1913	31	15	18	33	1.93
8296--8420	31	4.0	31	89	2	180	20	17	23	39	1.92
11554--11609	21	2.7	21	100	0	112	23	19	21	35	1.96
12455--12579	62	2.0	62	92	3	207	20	19	22	38	1.94
12455--12565	31	3.6	31	98	0	213	18	19	22	39	1.92
13251--19683	223	28.9	223	81	4	6735	31	16	17	34	1.92
13217--19683	444	14.5	444	81	4	6690	31	16	17	34	1.92
13217--19684	667	9.7	668	81	4	6750	31	16	17	34	1.92
22097--22611	220	2.3	220	86	4	725	33	17	16	33	1.92
22424--22798	194	1.9	193	92	0	633	30	17	15	36	1.91
22611--27796	443	11.5	445	76	8	4396	31	16	17	35	1.92
22611--25070	223	11.1	221	83	3	2753	30	16	17	35	1.92
25094--27766	223	12.1	223	81	4	2940	31	16	16	34	1.92
27800--28862	223	4.8	223	84	2	1308	31	16	16	34	1.92
27824--28862	444	2.3	442	87	3	1502	31	16	16	34	1.92
28710--29037	176	1.8	178	82	8	418	35	15	14	35	1.88
28866--30770	216	8.8	216	77	9	1534	31	15	17	35	1.91
28884--30770	215	8.7	219	78	8	1714	32	15	17	35	1.91
30623--30945	175	1.8	175	81	7	406	36	16	13	33	1.87
30797--31345	215	2.6	209	81	8	590	32	17	16	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31223--31553	178	1.9	178	82	6	429	35	16	13	34	1.89
31378--36490	221	23.4	223	78	7	4642	31	15	17	35	1.91
31402--36490	662	7.8	661	80	7	4894	31	15	17	35	1.91
36798--38191	223	6.3	223	83	2	1685	29	15	18	36	1.92
36798--38191	444	3.1	441	84	3	1692	29	15	18	36	1.92
36783--38191	667	2.1	664	85	3	1909	29	15	18	36	1.92
38094--38289	98	2.0	98	91	0	320	39	12	15	32	1.85
37875--38502	321	2.0	320	88	0	952	33	14	16	34	1.90
38192--39105	222	4.1	222	83	6	1114	32	15	16	35	1.91
39021--39190	85	2.0	85	97	0	322	27	18	9	44	1.80
38839--39413	309	1.9	308	86	4	818	30	16	15	38	1.90
40070--40114	21	2.0	23	87	8	67	51	0	4	44	1.21
41313--41470	61	2.7	58	84	5	192	31	11	17	39	1.85
53343--54073	356	2.0	357	96	2	1351	61	4	10	23	1.46
55850--56005	43	3.4	43	69	13	141	21	18	25	34	1.96
55830--56414	98	5.9	98	94	3	991	22	19	24	33	1.97
56085--56256	55	3.3	55	67	21	172	23	19	23	33	1.97
56222--56414	105	1.8	105	96	0	359	22	20	24	32	1.98
66659--66693	10	3.4	10	92	4	52	74	0	2	22	0.95
66665--66693	14	2.0	15	93	6	51	75	0	0	24	0.80
67639--68353	354	2.0	344	92	6	1179	61	4	11	22	1.47
69736--69773	2	19.5	2	94	5	69	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69737--69770	17	2.0	17	100	0	68	52	0	0	47	1.00

Tables:   1

The End!