genome.fa.s3885.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003885.1 Hibiscus syriacus cultivar Beakdansim tig00008386_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  757743

Tables:   1   2   3   4   

This is table  4  of  4  ( 455 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
602949--603003	20	2.8	19	83	8	65	16	23	23	36	1.94
603475--603519	18	2.5	18	85	0	63	15	15	42	26	1.87
604837--604874	20	1.9	20	88	0	58	50	21	15	13	1.78
605369--605463	20	4.7	20	80	2	91	23	17	24	34	1.96
605391--605525	41	3.3	41	81	4	130	20	21	20	37	1.94
605452--605544	20	4.6	20	78	4	96	18	24	18	38	1.92
605452--605547	41	2.3	41	98	0	183	18	23	17	39	1.92
614316--614362	2	24.5	2	91	8	80	46	0	0	53	1.00
614439--614468	3	10.0	3	100	0	60	33	0	0	66	0.92
614972--615007	3	12.0	3	100	0	72	66	0	0	33	0.92
621768--621813	4	11.5	4	95	0	83	23	2	26	47	1.63
624325--624358	13	2.6	13	85	0	50	5	23	5	64	1.38
625450--625520	37	2.0	35	89	8	108	60	12	0	26	1.32
629863--629977	60	1.9	60	85	3	160	38	15	13	33	1.86
631042--631100	20	3.0	20	87	0	82	25	23	8	42	1.82
632353--632381	2	15.0	2	92	7	51	48	0	0	51	1.00
641935--642075	44	3.3	42	71	12	69	45	9	17	28	1.78
642229--642293	32	2.0	32	100	0	130	64	4	12	18	1.43
642230--642285	19	3.3	19	67	27	61	62	1	14	21	1.40
642302--642406	43	2.5	44	80	7	119	53	5	13	27	1.62
642389--642446	29	2.0	30	86	3	82	46	13	24	15	1.82
645457--645502	14	3.2	13	85	14	56	43	4	15	36	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
645460--645503	15	3.0	14	84	15	54	43	6	15	34	1.74
646024--646067	17	2.5	17	88	3	61	43	2	0	54	1.12
646048--646112	30	2.2	30	86	5	87	49	0	1	49	1.10
646057--646112	22	2.5	23	82	5	71	51	0	1	46	1.11
646312--646402	42	2.2	42	91	0	146	49	18	12	19	1.79
652342--652418	31	2.5	31	93	0	127	40	20	19	19	1.92
655082--655114	16	2.1	16	100	0	66	33	18	6	42	1.75
659580--659604	13	1.9	13	100	0	50	0	20	0	80	0.72
659611--659649	20	2.0	20	89	0	60	10	33	33	23	1.88
659676--659718	21	2.0	21	82	8	52	20	23	25	30	1.99
666404--666428	13	1.9	13	100	0	50	0	20	0	80	0.72
666499--666541	21	2.0	21	81	0	50	16	25	25	32	1.96
669982--670140	63	2.4	65	82	10	175	28	23	28	18	1.98
670451--670530	29	2.8	28	84	7	106	40	8	11	40	1.72
670544--670603	30	2.0	31	90	3	95	36	6	23	33	1.81
670823--670889	22	3.0	22	97	0	125	19	26	25	28	1.99
676925--676967	21	2.0	21	81	0	50	30	30	25	13	1.94
676947--677099	68	2.2	69	87	4	213	27	26	27	18	1.98
677402--677473	29	2.5	29	93	0	117	38	9	12	38	1.76
677488--677547	30	2.0	31	90	3	95	36	6	23	33	1.81
677767--677833	22	3.0	22	100	0	134	19	26	26	26	1.99
678868--678913	23	2.0	24	91	4	76	50	13	6	30	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
678985--679040	18	3.1	18	81	0	76	17	23	42	16	1.88
691810--691869	25	2.4	25	100	0	120	48	8	3	40	1.50
692574--692626	22	2.4	23	81	9	65	56	1	1	39	1.21
693525--693570	24	1.9	24	86	0	65	28	8	2	60	1.38
695061--695111	22	2.2	22	83	13	59	33	0	1	64	1.05
700888--701128	28	8.5	29	69	10	101	17	24	20	38	1.93
700888--701130	57	4.3	57	77	6	237	17	23	20	38	1.93
702764--702811	23	2.1	23	84	0	60	37	12	16	33	1.86
703283--703347	23	2.8	23	77	9	78	43	18	6	32	1.75
703773--703838	23	2.9	23	88	0	96	37	19	6	36	1.77
702885--704054	490	2.4	485	95	0	2115	39	10	7	42	1.68
704204--704276	23	3.2	22	88	3	83	39	20	4	35	1.72
704214--704276	23	2.7	23	92	0	99	38	19	4	38	1.73
704684--704754	22	3.2	22	88	6	99	38	19	5	36	1.76
704037--705096	480	2.2	481	95	2	1907	41	11	7	40	1.69
703131--704959	921	2.0	917	95	2	3319	40	11	7	40	1.70
705096--705160	25	2.6	25	97	0	121	36	12	10	40	1.78
707746--707802	21	2.7	21	97	0	105	22	15	17	43	1.87
707767--708394	183	3.4	183	91	3	996	32	16	14	36	1.88
709599--709676	3	26.0	3	78	0	84	24	33	6	35	1.81
709612--709687	36	2.1	36	92	0	125	21	32	9	36	1.85
709600--709687	12	7.3	12	88	0	95	22	32	7	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
711157--711534	201	1.9	200	97	0	711	31	17	14	37	1.89
713474--713539	33	2.0	33	90	0	105	22	48	0	28	1.51
713573--713637	21	3.1	21	93	0	103	16	30	10	41	1.83
715849--715895	20	2.4	19	79	10	58	21	17	8	53	1.70
716030--716090	20	3.1	19	79	9	68	16	13	11	59	1.62
715816--716288	181	2.6	182	90	1	707	26	16	13	42	1.86
716270--716324	21	2.6	21	100	0	110	27	16	16	40	1.89
716939--717014	31	2.4	32	76	8	84	27	28	26	17	1.97
717888--717913	13	2.0	13	100	0	52	23	30	30	15	1.95
717890--717961	35	2.2	32	85	11	94	18	25	40	16	1.91
717903--717961	17	3.4	17	88	4	91	16	23	42	16	1.89
717884--717913	7	4.4	7	91	8	53	23	30	30	16	1.96
717955--718019	19	3.4	19	91	6	96	26	30	26	16	1.97
717957--718035	10	8.1	10	76	10	83	26	30	24	18	1.98
724290--724365	31	2.4	31	80	2	89	27	31	26	14	1.95
724242--724365	63	2.0	63	82	9	155	26	29	27	16	1.97
725239--725277	13	3.0	13	100	0	78	23	30	30	15	1.95
725235--725277	20	2.2	20	91	8	70	23	30	30	16	1.96
725267--725324	17	3.4	17	95	0	98	17	24	41	17	1.90
725235--725277	7	6.4	7	89	10	72	23	30	30	16	1.96
725318--725407	19	4.7	19	86	6	119	27	30	24	17	1.97
725320--725407	9	9.1	10	74	12	85	28	30	22	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
726189--726684	229	2.2	229	95	2	915	39	7	7	45	1.61
729411--729483	34	2.1	34	100	0	146	47	20	0	31	1.50
737195--737294	50	2.0	50	92	0	164	37	13	18	32	1.88
739541--739583	15	2.8	16	89	10	63	34	4	2	58	1.32
742225--742363	52	2.7	52	86	4	190	24	23	24	27	2.00
743611--743649	20	2.0	21	90	10	64	23	7	10	58	1.56
747807--747873	24	2.8	23	74	14	64	55	17	10	16	1.69

Tables:   1   2   3   4

The End!