genome.fa.s3902.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003902.1 Hibiscus syriacus cultivar Beakdansim tig00008433_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  230710

Tables:   1   2   

This is table  1  of  2  ( 155 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17063--17320	128	2.0	128	97	0	489	37	14	20	27	1.92
22967--22991	2	12.5	2	100	0	50	48	0	0	52	1.00
23272--23307	12	3.0	12	100	0	72	16	16	8	58	1.61
27568--27616	2	24.5	2	100	0	98	48	0	0	51	1.00
27925--27985	32	1.9	32	96	0	113	36	11	6	45	1.66
30159--30294	60	2.3	60	79	12	145	37	13	17	31	1.88
30615--30663	22	2.3	21	80	19	57	40	36	0	22	1.54
31718--31776	30	2.0	30	90	6	93	28	0	23	47	1.52
32890--32936	24	2.0	24	82	0	58	42	0	2	55	1.12
32959--33021	32	2.0	31	82	11	76	60	15	4	19	1.53
36108--36151	19	2.2	20	96	4	81	36	0	4	59	1.18
53071--53137	16	4.2	16	76	3	64	16	14	26	41	1.87
54999--55066	21	3.3	20	70	12	57	48	10	4	36	1.57
54997--55078	41	2.0	40	90	2	128	47	9	3	39	1.54
54997--55056	20	3.0	20	68	4	57	45	11	3	40	1.57
55284--55347	2	32.0	2	100	0	128	50	0	0	50	1.00
62815--62866	14	3.7	14	76	0	50	42	26	3	26	1.73
62836--62873	14	2.8	14	88	4	51	44	26	0	28	1.54
63245--63275	2	15.5	2	100	0	62	48	0	0	51	1.00
74338--74473	60	2.3	59	80	3	139	34	15	16	33	1.90
75288--75314	14	1.9	14	100	0	54	48	0	0	51	1.00
75517--75560	18	2.4	18	88	0	61	15	31	34	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78681--78714	18	2.0	17	88	11	52	55	0	0	44	0.99
82005--82055	26	2.0	26	88	0	75	33	25	9	31	1.88
91002--91042	6	6.8	6	97	0	64	51	9	0	39	1.35
90992--91044	2	25.5	2	77	7	52	49	9	1	39	1.46
90992--91044	12	4.2	12	87	4	61	49	9	1	39	1.46
92163--92200	18	2.2	17	90	9	60	39	2	2	55	1.28
100203--100249	3	15.7	3	100	0	94	31	0	0	68	0.90
107867--107916	20	2.6	18	82	14	64	52	2	6	40	1.38
107865--107915	19	2.6	20	82	11	70	50	1	7	39	1.42
111419--111563	76	1.9	76	92	0	245	55	11	7	26	1.61
119564--120595	144	7.2	144	66	9	659	35	16	19	28	1.94
119425--120637	288	4.2	288	97	0	2230	34	16	20	28	1.94
120582--120723	72	2.0	72	85	0	194	33	11	19	35	1.89
120289--121250	360	2.7	360	95	0	1710	35	15	19	29	1.93
120937--121086	72	2.1	72	83	0	192	34	13	18	34	1.90
121819--122124	142	2.2	142	96	0	558	23	23	21	32	1.98
123377--123427	22	2.3	22	79	3	57	37	1	1	58	1.20
125032--125076	19	2.4	19	76	0	54	80	6	2	11	0.99
125024--125082	30	2.1	27	87	9	82	77	8	3	10	1.08
125147--125193	17	2.7	17	81	12	60	72	0	10	17	1.12
125286--125388	11	9.4	10	72	19	57	68	0	0	29	1.02
125225--125399	71	2.5	67	77	17	180	69	1	2	26	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125228--125388	73	2.3	69	80	14	181	68	1	1	27	1.10
125344--125405	13	4.8	13	73	25	51	67	0	3	29	1.06
125444--125516	23	3.0	24	80	13	69	61	0	4	34	1.15
125448--125554	19	5.5	21	69	20	63	64	0	3	31	1.11
125444--125529	25	3.6	23	73	14	59	62	0	4	32	1.15
125484--125537	4	12.8	4	80	7	54	70	0	3	25	1.04
126588--126774	83	2.2	83	81	5	207	24	18	20	35	1.95
126953--127211	110	2.4	110	77	10	266	25	18	22	33	1.96
127874--128041	65	2.5	67	85	6	209	38	9	20	31	1.85
127989--128316	36	9.4	36	70	17	194	39	12	18	29	1.88
128002--128087	37	2.4	36	82	2	109	41	15	18	24	1.89
127935--128194	138	1.9	138	87	3	380	40	12	18	28	1.87
128029--128392	102	3.6	102	86	3	369	38	12	18	30	1.88
128230--128392	37	4.6	37	71	18	141	36	13	20	30	1.91
128131--128392	102	2.6	101	91	1	407	36	12	19	30	1.89
129862--129998	68	2.0	69	94	1	240	24	14	24	37	1.93
133181--133237	26	2.1	27	80	3	62	75	7	7	10	1.19
133217--133256	17	2.2	19	91	8	66	80	2	2	15	0.93
133439--133616	41	4.3	40	69	11	119	26	21	17	33	1.96
133461--133616	21	7.5	21	72	7	104	25	21	17	34	1.96
133457--133682	103	2.2	102	80	10	273	29	21	17	31	1.96
133606--133677	20	3.5	20	79	5	65	37	22	19	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134193--134277	19	4.7	19	71	20	74	45	23	20	10	1.81
134273--134371	19	5.1	19	84	4	126	14	23	18	44	1.86
135278--136086	401	2.0	402	92	3	1349	31	21	18	28	1.97
136920--136986	21	3.2	21	66	6	55	23	35	20	19	1.95
136868--136986	42	2.8	42	81	5	107	22	36	18	22	1.95
138154--138190	14	2.6	14	88	12	58	29	0	21	48	1.50
138315--138371	14	3.7	14	75	20	60	43	22	24	8	1.81
138297--138386	33	2.7	33	94	0	153	43	21	22	13	1.87
138297--138357	19	3.5	19	74	21	69	44	21	22	11	1.84
138386--138512	33	3.8	33	83	8	177	14	20	19	44	1.86
138454--138512	19	3.4	19	66	22	56	13	20	18	47	1.82
141002--141055	24	2.2	24	93	0	90	40	20	14	24	1.90
141018--141084	24	2.7	24	81	4	62	37	20	11	29	1.89
142173--142258	20	4.3	19	75	10	82	39	23	22	15	1.91
142289--142362	19	4.5	16	83	16	66	13	20	18	47	1.82
142285--142352	19	3.8	19	87	12	101	13	22	17	47	1.82
144435--144525	14	5.4	18	70	23	72	46	23	17	13	1.83
144452--144541	14	5.8	14	74	21	81	47	24	16	11	1.79
144435--144557	33	3.8	33	91	2	185	46	25	17	11	1.81
144435--144557	65	1.9	66	88	5	187	46	25	17	11	1.81
144565--144650	34	2.6	34	92	1	147	15	18	17	48	1.81
144635--144678	20	2.2	20	88	4	63	18	25	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144644--144689	20	2.3	20	84	0	56	17	21	23	36	1.94
145155--145199	18	2.5	18	88	0	72	13	15	44	26	1.83
146519--146556	20	1.9	20	88	0	58	50	21	15	13	1.78
146841--146884	22	2.0	22	90	0	70	20	15	43	20	1.88
147052--147247	20	9.6	20	85	5	182	23	16	24	34	1.95
147236--147287	20	2.5	21	87	3	70	19	25	17	38	1.93
147048--147270	122	1.8	122	80	7	265	24	17	23	34	1.96
147318--147358	21	2.0	21	85	0	55	34	29	17	19	1.94
147509--147556	18	2.7	18	77	3	53	72	0	10	16	1.10
147582--147674	34	2.6	34	83	14	91	69	4	3	22	1.20
147655--147688	16	2.1	17	88	5	52	76	0	5	17	0.98
147850--147928	14	5.4	14	72	17	63	68	0	2	29	1.03
147839--147910	25	3.0	24	80	9	85	68	0	4	27	1.08
147819--147910	25	3.8	23	71	14	60	64	0	4	31	1.13
148327--148369	17	2.5	17	85	7	52	41	23	6	27	1.80
150583--150633	16	3.0	16	76	15	57	54	3	0	41	1.19
150600--150661	19	3.1	19	84	11	79	62	1	0	35	1.05
153298--153512	72	3.0	72	87	0	277	33	13	18	34	1.89
153450--153884	144	3.0	141	64	11	333	35	15	21	27	1.93
153437--153966	288	1.8	288	92	0	907	34	15	20	28	1.94
154600--154702	35	3.0	34	95	2	188	14	29	12	43	1.82
155025--155049	12	2.1	12	100	0	50	40	0	8	52	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155031--155354	37	8.7	39	75	16	157	49	2	4	43	1.35
154975--155351	36	10.4	37	74	19	285	48	1	5	44	1.35
155074--155360	73	4.0	69	81	13	287	49	2	4	43	1.37
155245--155347	11	8.5	12	67	20	54	49	0	4	44	1.30
155073--155353	37	7.7	36	79	10	234	49	2	4	43	1.36
155379--155430	4	13.8	4	78	17	58	23	1	0	75	0.91
155384--155430	7	6.4	7	83	14	51	23	2	0	74	0.93
155385--155425	11	3.8	11	93	6	75	24	0	0	75	0.80
156484--156516	5	6.6	5	100	0	66	18	0	0	81	0.68
158316--158391	36	2.1	36	100	0	152	51	15	25	7	1.70

Tables:   1   2