Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003902.1 Hibiscus syriacus cultivar Beakdansim tig00008433_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  230710

Tables:   1   2   

This is table  2  of  2  ( 155 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
162059--162827
84
9.1
84
84
1
937
32
25
18
23
1.97
162042--162827
337
2.3
337
88
1
1155
32
25
18
23
1.97
162041--162830
253
3.1
250
83
2
1008
32
25
18
23
1.97
163452--163518
31
2.2
31
86
0
98
41
0
8
49
1.34
163514--163824
36
8.4
36
72
18
173
48
2
5
43
1.38
163501--163835
73
4.5
74
77
16
307
48
2
5
44
1.37
163711--163813
13
8.3
13
67
20
51
48
0
5
45
1.26
163445--163835
149
2.6
149
81
10
403
47
1
5
45
1.37
163846--163887
4
11.5
4
90
10
56
26
0
0
73
0.83
163846--163902
17
3.4
18
81
13
68
24
1
1
71
1.04
163846--163890
7
6.3
7
92
7
65
26
0
0
73
0.84
164985--165050
31
2.1
31
83
10
82
18
12
7
62
1.52
165054--165090
4
9.0
4
94
5
65
27
0
0
72
0.84
181726--181817
32
2.9
31
78
15
91
48
6
1
43
1.35
181739--181824
21
4.0
22
75
11
61
47
5
1
45
1.34
182300--182428
60
2.1
60
81
4
143
37
14
15
32
1.88
187363--187407
23
2.0
23
90
0
72
22
24
28
24
1.99
193759--193811
19
2.7
19
86
11
72
13
18
18
49
1.80
198396--198440
20
2.1
22
88
8
67
66
2
4
26
1.22
198451--198492
12
3.4
12
87
6
57
85
0
2
11
0.68
200810--200900
28
3.1
28
78
17
94
34
9
17
38
1.83
200798--200916
33
3.8
32
84
11
149
32
10
20
36
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
200972--201074
37
2.8
37
82
2
118
40
15
21
22
1.90
201197--202558
315
4.3
316
97
0
2437
22
17
25
34
1.96
201197--202558
211
6.5
210
96
0
2424
22
17
25
34
1.96
201197--202558
526
2.6
526
98
0
2593
22
17
25
34
1.96
206294--206338
20
2.1
22
88
8
67
66
2
4
26
1.22
206348--206382
17
2.1
17
88
0
52
85
0
2
11
0.69
206366--206392
14
1.9
14
100
0
54
81
0
0
18
0.69
209352--209388
2
19.5
2
89
10
60
48
0
0
51
1.00
213295--213320
12
2.2
12
100
0
52
50
0
0
50
1.00
215633--215662
15
2.1
15
93
6
53
53
6
23
16
1.66
223771--223960
94
2.0
93
88
8
280
25
17
21
35
1.95
223771--223956
31
6.0
31
88
8
263
24
18
21
35
1.95
224686--224732
19
2.5
19
82
0
67
34
14
8
42
1.77

Tables:   1   2

The End!