genome.fa.s391.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000391.1 Hibiscus syriacus cultivar Beakdansim tig00000717_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53396

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2496--2539	15	2.6	17	79	20	56	18	0	25	56	1.41
4109--4135	11	2.5	11	100	0	54	11	0	51	37	1.37
5369--5401	16	2.1	16	100	0	66	42	12	33	12	1.79
12457--12485	12	2.3	13	94	5	51	86	0	13	0	0.58
12450--12490	17	2.4	17	88	8	57	82	0	17	0	0.66
12450--12508	17	3.4	17	81	11	50	79	3	16	0	0.86
12547--12587	21	2.0	21	95	0	73	80	2	14	2	0.92
13643--13920	66	4.4	65	71	12	220	33	25	16	24	1.95
13523--13920	185	2.1	186	87	0	582	33	24	16	25	1.95
13710--14109	121	3.3	119	85	2	503	33	25	17	23	1.96
14935--14962	14	2.0	14	100	0	56	14	42	21	21	1.88
16191--16218	6	4.7	6	100	0	56	28	0	0	71	0.86
17430--17797	20	18.5	20	84	5	440	34	26	18	20	1.96
20964--21267	19	17.3	19	79	16	361	46	17	20	14	1.83
20964--21292	33	9.5	34	81	13	281	46	17	20	14	1.84
20992--21267	52	5.2	52	91	4	364	46	16	21	15	1.83
21031--21267	71	3.3	71	84	11	358	46	16	21	15	1.83
20964--21302	142	2.4	135	89	5	491	46	17	20	15	1.84
20964--21292	52	6.3	55	86	9	314	46	17	20	14	1.84
21299--21400	19	5.6	19	85	12	151	14	23	17	44	1.86
21507--21542	14	2.6	14	86	4	56	47	22	0	30	1.52
23520--23576	14	3.7	14	77	20	60	45	22	21	10	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23501--23593	33	2.8	33	95	0	168	47	21	20	10	1.80
23464--23598	19	7.6	19	76	16	128	45	23	19	11	1.82
23594--23722	19	7.3	19	75	17	125	8	17	28	45	1.77
23594--23685	33	2.8	33	93	3	150	7	18	28	45	1.76
24756--24845	14	5.7	14	74	23	81	42	23	25	8	1.83
24748--24862	33	3.5	33	95	0	212	45	20	24	9	1.81
24755--24867	19	6.8	18	72	23	88	43	22	24	9	1.83
24863--24933	33	2.2	33	92	0	115	9	21	25	43	1.83
24874--24955	33	2.5	33	87	2	110	10	24	21	42	1.85
24890--24974	20	4.6	19	73	16	72	12	23	20	43	1.86
25054--25124	33	2.2	33	92	0	115	47	18	22	11	1.80
25306--25360	22	2.5	22	81	0	74	20	16	40	23	1.91
25506--25698	20	9.6	20	83	5	219	19	19	26	34	1.96
25754--25805	20	2.6	20	96	0	95	21	13	26	38	1.90
26488--26586	5	20.4	5	85	14	129	58	0	0	41	0.98
26487--26584	18	5.2	18	86	13	144	58	0	0	41	0.98
26501--26582	13	6.2	13	87	12	123	59	0	0	40	0.97
26490--26586	35	2.7	37	92	7	173	58	0	0	41	0.98
36053--36083	2	16.0	2	93	6	55	48	0	0	51	1.00
36075--36556	113	4.5	104	75	18	359	43	3	7	45	1.47
36182--36242	27	2.3	26	86	5	88	44	0	4	50	1.23
36150--36496	75	5.0	63	74	18	209	44	3	6	45	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36156--36430	38	7.6	37	77	15	179	45	2	6	45	1.43
36219--36492	38	7.5	37	81	12	291	44	3	6	45	1.46
36219--36556	75	4.7	74	77	12	298	44	3	6	45	1.44
37358--37396	17	2.4	17	95	4	71	51	5	0	43	1.24
37456--37480	11	2.3	11	100	0	50	24	0	32	44	1.54
39452--52558	631	20.7	631	80	10	13723	27	18	20	33	1.95
43408--52558	626	14.7	631	87	4	13149	27	18	20	34	1.95

Tables:   1

The End!