genome.fa.s3924.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003924.1 Hibiscus syriacus cultivar Beakdansim tig00008483_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1466330

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 520 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1006--1037	16	2.0	16	93	0	55	78	0	21	0	0.76
7396--7420	13	1.9	13	100	0	50	48	28	8	16	1.74
15731--15816	28	2.9	30	81	10	106	25	30	12	31	1.93
18763--18841	35	2.2	37	90	4	126	31	36	3	27	1.75
27981--28028	15	3.1	15	77	17	53	8	27	0	64	1.22
29445--29488	22	2.0	22	100	0	88	45	13	9	31	1.75
33413--33463	20	2.6	20	87	3	68	39	13	5	41	1.69
33833--33872	19	2.0	20	86	13	57	62	0	12	25	1.30
40539--40570	8	3.9	8	95	4	55	0	0	9	90	0.45
40538--40581	9	4.9	9	88	8	63	2	2	6	88	0.67
40539--40571	17	1.9	17	100	0	66	0	0	9	90	0.44
40542--40579	17	2.2	17	90	0	58	2	2	7	86	0.74
50832--50872	21	2.0	21	85	0	55	9	7	7	75	1.18
56270--56309	19	2.0	20	90	4	64	20	15	0	65	1.28
56563--56623	10	6.1	9	75	17	50	78	3	16	1	0.96
56598--56627	5	6.0	5	92	0	51	83	0	16	0	0.65
60334--60374	19	2.1	20	95	4	75	21	14	0	63	1.30
60990--61044	16	3.4	16	73	26	53	14	23	0	61	1.33
60998--61052	15	3.5	15	73	22	51	14	20	0	65	1.27
62678--62727	21	2.4	21	93	0	91	66	10	4	20	1.38
68599--68658	30	2.0	31	83	3	77	26	8	10	55	1.61
72811--72909	43	2.3	44	91	6	159	41	16	17	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75366--75417	21	2.6	21	90	6	81	32	13	7	46	1.72
76092--76203	50	2.3	46	79	15	104	31	2	13	52	1.54
78276--78325	21	2.4	20	86	6	64	84	12	4	0	0.76
78276--78325	20	2.5	20	87	9	66	84	12	4	0	0.76
82894--82932	10	3.8	10	81	18	53	79	0	20	0	0.73
95098--95137	15	2.6	16	84	8	55	72	2	7	17	1.19
96422--96493	17	4.3	16	74	19	67	77	2	18	1	0.96
96428--96493	6	10.5	6	73	20	55	77	3	18	1	0.98
96423--96467	19	2.5	18	85	7	56	73	4	20	2	1.11
96428--96504	39	2.0	40	85	12	106	75	3	16	3	1.11
98637--98804	84	2.0	84	100	0	336	21	17	23	36	1.94
102818--102862	22	2.0	22	91	0	72	57	15	15	11	1.64
102822--102875	22	2.5	21	80	11	56	57	14	18	9	1.64
103586--103618	6	5.8	6	86	13	52	0	15	0	84	0.61
103586--103635	11	4.6	11	78	11	59	0	14	4	82	0.82
103586--103618	17	1.9	17	93	0	57	0	15	0	84	0.61
103588--103635	22	2.2	22	88	7	71	0	12	4	83	0.79
104022--104133	13	9.2	13	71	20	57	33	2	34	29	1.72
104003--104117	36	3.2	36	92	1	187	29	3	36	30	1.74
104003--104142	72	2.0	71	82	4	174	31	2	35	30	1.72
106070--106110	2	20.5	2	100	0	82	51	0	0	48	1.00
110178--110240	28	2.2	28	83	5	74	11	14	14	60	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112296--112375	36	2.2	36	88	2	117	27	3	36	32	1.75
116390--116433	21	2.2	19	84	8	52	2	13	6	77	1.07
116822--116859	11	3.5	11	79	13	51	28	5	34	31	1.80
116816--116868	22	2.3	23	96	3	99	26	3	37	32	1.74
119202--119466	133	2.0	132	97	2	498	33	14	10	42	1.79
121029--121054	10	2.6	10	100	0	52	73	0	26	0	0.84
123293--123559	133	2.0	133	98	0	516	33	14	10	41	1.80
126194--126253	30	2.0	31	87	9	88	28	6	10	55	1.58
127104--127155	21	2.6	21	90	6	81	34	13	5	46	1.67
127559--127598	19	2.0	20	90	4	64	20	15	0	65	1.28
132306--132340	11	3.1	12	92	8	56	0	22	0	77	0.78
132309--132351	18	2.4	18	85	11	54	2	20	2	74	1.04
133672--133819	75	2.0	75	97	2	280	37	29	13	20	1.91
141903--141938	13	2.8	13	100	0	72	33	38	5	22	1.77
141864--141958	48	1.9	50	87	4	140	30	37	4	27	1.76
142401--142447	14	3.1	15	75	12	51	72	6	19	2	1.17
147637--147762	47	2.8	45	86	5	173	30	23	7	38	1.83
149180--149243	29	2.2	30	80	5	76	34	23	4	37	1.76
150495--150570	35	2.1	37	87	4	111	28	38	3	28	1.75
151815--151860	22	2.0	22	83	12	56	34	0	13	52	1.40
152340--152381	22	1.9	22	90	9	68	14	11	4	69	1.34
152708--152733	10	2.6	10	100	0	52	76	7	15	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156925--156966	22	1.9	22	90	9	68	16	9	4	69	1.33
159086--159139	24	2.2	25	80	9	67	35	12	20	31	1.90
160425--160467	19	2.2	20	87	4	61	48	6	9	34	1.62
167550--167621	11	6.5	11	77	15	58	0	9	13	76	1.02
167558--167621	21	3.0	22	81	6	69	0	9	12	78	0.97
167550--167617	32	2.1	32	86	5	93	0	10	13	76	1.02
169190--169236	14	3.1	15	75	12	51	72	6	19	2	1.17
176637--176666	13	2.4	13	94	5	53	26	30	0	43	1.55
181550--181589	19	2.0	20	90	4	64	20	15	0	65	1.28
190686--190738	23	2.2	24	90	3	81	9	16	11	62	1.54
191554--191613	30	2.0	31	86	3	86	28	8	10	53	1.63
192502--192552	20	2.6	20	90	3	77	35	15	5	43	1.71
195073--195125	24	2.3	22	81	12	54	32	18	18	30	1.96
197397--197448	21	2.6	21	90	6	81	32	13	7	46	1.72
201695--201754	18	3.2	18	75	13	59	75	15	8	1	1.12
201704--201754	9	5.4	9	79	6	57	72	15	9	1	1.19
201695--201754	28	2.1	28	93	0	102	75	15	8	1	1.12
208681--208732	21	2.6	21	90	6	81	32	13	7	46	1.72
209800--209879	18	4.6	17	68	22	51	6	16	5	72	1.23
209801--209872	33	2.2	32	79	18	78	6	15	4	73	1.20
209980--210021	21	2.0	21	95	0	75	33	21	23	21	1.97
210156--210190	16	2.4	14	86	13	52	62	0	11	25	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214758--214801	20	2.2	20	84	8	54	68	0	9	22	1.18
219178--219279	36	2.9	36	92	1	161	30	35	4	29	1.79
219652--219695	12	3.6	11	82	17	52	75	4	20	0	0.98
219717--219763	14	3.1	15	75	12	51	72	6	19	2	1.17
224884--224985	36	2.9	36	92	1	161	30	35	4	29	1.79
228507--228551	19	2.4	19	88	7	65	17	15	0	66	1.25
228817--228864	25	1.9	25	83	8	62	77	4	12	6	1.11
234106--234145	19	2.0	20	90	4	64	20	15	0	65	1.28
234102--234148	19	2.6	18	83	12	60	19	14	0	65	1.26
239716--239771	13	4.7	11	74	21	51	0	19	1	78	0.84
239716--239771	18	3.1	18	82	17	71	0	19	1	78	0.84
240486--240536	19	2.6	20	90	3	77	43	5	15	35	1.71
242839--242869	15	2.1	15	100	0	62	41	25	6	25	1.79
243530--243589	30	2.0	31	83	3	77	28	10	10	51	1.67
253798--253833	18	2.0	18	88	0	54	83	11	5	0	0.80
265975--266039	13	5.4	12	75	21	57	29	3	35	32	1.73
265957--266057	36	2.8	36	93	1	168	29	3	35	30	1.76
271081--271148	26	2.6	26	95	0	118	17	32	19	30	1.95
271927--271991	27	2.4	28	80	12	80	61	10	16	10	1.56
282836--282902	24	2.8	24	75	6	64	64	16	14	4	1.45
296066--296197	52	2.5	53	87	2	185	27	21	10	40	1.86
305640--306008	55	6.7	55	91	0	587	28	22	15	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305987--307038	54	19.9	54	82	6	822	22	27	18	31	1.97
305986--307053	108	10.1	108	84	6	1309	22	27	18	31	1.97
316749--316797	23	2.2	21	92	7	80	67	10	6	16	1.39
320094--320120	11	2.5	11	100	0	54	92	7	0	0	0.38
320094--320165	17	4.2	17	84	10	85	81	9	8	0	0.86
320094--320165	33	2.1	34	85	7	94	81	9	8	0	0.86
331755--331886	52	2.5	53	87	2	185	28	21	10	40	1.86
333553--333592	20	2.0	21	90	5	64	80	12	7	0	0.91
335232--335273	21	2.0	21	85	0	57	23	30	9	35	1.87
339135--339214	35	2.2	37	88	4	119	27	3	38	30	1.74

Tables:   1   2   3   4   5